- Köhler S, Dölken SC, Rath A, Ayme S, Robinson PN
Ontological Phenotype Standards for Neurogenetics
Human Mutation, 2012 [advance access]
- Chen CK, Mungall C, Gkoutos GV, Dölken SC, Köhler S, Ruef BJ, Smith C, Westerfield M, Robinson PN, Lewis SE, Schofield PN, Smedley D
MouseFinder: candidate disease genes from mouse phenotype data
Human Mutation, 2012 [scholar]
- Schulz MH, Köhler S, Bauer S, Robinson PN
Exact Score Distribution Computation for Ontological Similarity Searches
BMC Bioinformatics, 12:441, 2011 [scholar]
- Köhler S, Bauer S, Mungall CJ, Carletti G, Smith CL, Schofield P, Gkoutos GV, Robinson PN
Improving ontologies by automatic reasoning and evaluation of logical definitions.
BMC Bioinformatics, 12:418, 2011 [scholar]
- Rödelsperger C, Guo G, Kolanczyk M, Pletschacher A, Köhler S, Bauer S, Schulz MH, Robinson PN
Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions.
Nucleic Acids Research, November 2010 [scholar]
- Krawitz PM, Schweiger MR, Rödelsperger C, Marcelis C, Kölsch U, Meisel C, Stephani F, Kinoshita T, Murakami Y, Bauer S, Isau M, Fischer A, Dahl A, Kerick M, Hecht J, Köhler S, Jäger M, Grünhagen J, Jonske de Condor B, Dölken S, Brunner HG, Meinecke P, Passarge E, Thompson MD, Cole DE, Horn D, Roscioli T, Mundlos S, Robinson PN
Identity-by-descent filtering of exome sequence data identifies PIGV mutations in hyperphosphatasia mental retardation syndrome.
Nature Genetics (2010) [scholar]
- Dölken S, Köhler S, Bauer, S, Ott CE, Krawitz P, Horn D, Mundlos S, and Robinson PN
Computational methods for the study of human disease manifestations. The Human Phenotype Ontology
Medizinische Genetik 22(2), June 2010 [scholar]
-
Köhler S*, Bauer S*, Schulz MH*, Robinson PN*
Methods for scoring items using one or more ontologies
U.S. patent application [WIPO]
* authors contributed equally
- Köhler S, Schulz MH, Krawitz P, Bauer S, Dölken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN
Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies.
The American Journal of Human Genetics 85, 457-64, October 2009 [scholar]
- Rödelsperger C, Köhler S, Schulz MH, Manke T, Bauer S, Robinson PN
Short Ultraconserved Promoter Regions Deliniate a Class of Preferentially Expressed Alternatively Spliced Transcripts.
Genomics 94(5):308-316, November 2009 [scholar]
- Gkoutos GV, Mungall C, Dölken S, Ashburner M, Lewis S, Hancock J, Schofield P, Köhler S, Robinson PN
Entity/Quality-Based Logical Definitions for the Human Skeletal Phenome using PATO.
Proceedings of the 31st Annual International Conference of the IEEE Engineering in
Medicine and Biology Society [scholar]
- Schulz MH, Köhler S, Bauer S, Vingron M, Robinson PN
Exact Score Distribution Computation for Similarity Searches in Ontologies.
WABI 2009, LNBI 5724, pp. 298-309, 2009 [scholar]
- Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S
The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease. [scholar]
The American Journal of Human Genetics 83, 610-615, November 2008.
- Köhler S*, Bauer S*, Horn D, Robinson PN
Walking the Interactome for Prioritization of Candidate Disease Genes.
The American Journal of Human Genetics 82, 949-958, April 2008. [scholar]
* both authors contributed equally
- Köhler S (2007)
Support Vector Machines for Disease Gene Prediction from Protein-Protein Interaction Data.
Master thesis - FU Berlin.
- Köhler S (2005)
Development of a prototype platform to search for locally stored tissue samples for research and clinical trials. (CRIP)
Bachelor thesis - FU Berlin.
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