Computational Biology Group > Team > Sebastian Köhler


Sebastian Köhler, M.Sc.

Institute for Medical Genetics
Universitätsklinikum Charité
Humboldt-Universität
Augustenburger Platz 1
13353 Berlin
Germany

email:  sebastian.koehler(at)charite.de,
phone: 0049 30 450 569 135

Publications

 
  • Köhler S, Schulz MH, Krawitz P, Bauer S, Dölken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN
    Clinical Diagnostics in Human Genetics with Semantic Similarity Searches in Ontologies.
    The American Journal of Human Genetics 85, 457-64, October 2009 [pubmed]




  • Rödelsperger C, Köhler S, Schulz MH, Manke T, Bauer S, Robinson PN
    Short Ultraconserved Promoter Regions Deliniate a Class of Preferentially Expressed Alternatively Spliced Transcripts.
    Genomics 94(5):308-316, November 2009 [scholar]

  • Gkoutos GV, Mungall C, Dölken S, Ashburner M, Lewis S, Hancock J, Schofield P, Köhler S, Robinson PN
    Entity/Quality-Based Logical Definitions for the Human Skeletal Phenome using PATO.
    Proceedings of the 31st Annual International Conference of the IEEE Engineering in
    Medicine and Biology Society
    [pubmed]

  • Schulz MH, Köhler S, Bauer S, Vingron M, Robinson PN
    Exact Score Distribution Computation for Similarity Searches in Ontologies.
    WABI 2009, LNBI 5724, pp. 298-309, 2009 [scholar]

  • Robinson PN, Köhler S, Bauer S, Seelow D, Horn D, Mundlos S
    The Human Phenotype Ontology: A Tool for Annotating and Analyzing Human Hereditary Disease. [scholar]
    The American Journal of Human Genetics 83, 610-615, November 2008.





  • Köhler S*, Bauer S*, Horn D, Robinson PN
    Walking the Interactome for Prioritization of Candidate Disease Genes.
    The American Journal of Human Genetics 82, 949-958, April 2008. [scholar]
    * both authors contributed equally








  • Köhler S (2007)
    Support Vector Machines for Disease Gene Prediction from Protein-Protein Interaction Data.
    Master thesis - FU Berlin.

  • Köhler S (2005)
    Development of a prototype platform to search for locally stored tissue samples for research and clinical trials. (CRIP)
    Bachelor thesis - FU Berlin.


Talks & Posters

  • Poster at the 20th Annual Meeting of The German Society of Human Genetics
    April 1-3, 2009, Aachen, Germany

  • Talk at the 19th Annual Meeting of The German Society of Human Genetics
    April 8-10, 2008, Hannover, Germany


Research Interest

 


 

Short Curriculum Vitae

 
   
  • Aug 2004 - Oct 2004
  • 2005
  • Apr 2005 - Jun 2006
  • RZPD (now imaGenes)
    Student research assistant
  • Jun 2006 - Sep 2006
  • GabiPD
    Student research assistant
  • 2007
  • since 2007