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A         annotated/OMIM-617282.tab
A         annotated/OMIM-617284.tab
A         annotated/OMIM-617290.tab
A         annotated/OMIM-617294.tab
A         annotated/OMIM-617296.tab
A         annotated/OMIM-617297.tab
A         annotated/OMIM-617300.tab
A         annotated/OMIM-617301.tab
A         annotated/OMIM-617302.tab
A         annotated/OMIM-617303.tab
A         annotated/OMIM-617304.tab
A         annotated/OMIM-617306.tab
A         annotated/OMIM-617308.tab
A         annotated/OMIM-617315.tab
A         annotated/OMIM-617319.tab
A         annotated/OMIM-617320.tab
A         annotated/OMIM-617323.tab
A         annotated/OMIM-617330.tab
A         annotated/OMIM-617333.tab
A         annotated/OMIM-617336.tab
A         annotated/OMIM-617337.tab
A         annotated/OMIM-617339.tab
A         annotated/OMIM-617341.tab
A         annotated/OMIM-617343.tab
A         annotated/OMIM-617349.tab
A         annotated/OMIM-617350.tab
A         annotated/OMIM-617360.tab
A         annotated/OMIM-617364.tab
A         annotated/OMIM-617370.tab
A         annotated/OMIM-617383.tab
A         annotated/OMIM-617384.tab
A         annotated/OMIM-617388.tab
A         annotated/OMIM-617389.tab
A         annotated/OMIM-617391.tab
A         annotated/OMIM-617392.tab
A         annotated/OMIM-617393.tab
A         annotated/OMIM-617394.tab
A         annotated/OMIM-617395.tab
A         annotated/OMIM-617396.tab
A         annotated/OMIM-617397.tab
A         annotated/OMIM-617402.tab
A         annotated/OMIM-617404.tab
A         annotated/OMIM-617405.tab
A         annotated/OMIM-617406.tab
A         annotated/OMIM-617408.tab
A         annotated/OMIM-617409.tab
A         annotated/OMIM-617412.tab
A         annotated/OMIM-617425.tab
A         annotated/OMIM-617432.tab
A         annotated/OMIM-617433.tab
A         annotated/OMIM-617439.tab
A         annotated/OMIM-617441.tab
A         annotated/OMIM-617442.tab
A         annotated/OMIM-617450.tab
A         annotated/OMIM-617452.tab
A         annotated/OMIM-617460.tab
A         annotated/OMIM-617466.tab
A         annotated/OMIM-617468.tab
A         annotated/OMIM-617478.tab
A         annotated/OMIM-617506.tab
A         annotated/OMIM-617526.tab
A         annotated/OMIM-617537.tab
A         annotated/OMIM-617784.tab
A         annotated/OMIM-617895.tab
A         annotated/OMIM-617952.tab
A         annotated/omit-list.txt
A         ignore_for_annotation.txt
A         misc
A         misc/.gitignore
A         misc/cataract
A         misc/cataract/MIM-107250.tab
A         misc/cataract/MIM-115650.tab
A         misc/cataract/MIM-115665.tab
A         misc/cataract/MIM-116600.tab
A         misc/cataract/MIM-116800.tab
A         misc/cataract/MIM-123680.tab
A         misc/cataract/MIM-123730.tab
A         misc/cataract/MIM-154050.tab
A         misc/cataract/MIM-600897.tab
A         misc/cataract/MIM-601885.tab
A         misc/cataract/MIM-604307.tab
A         misc/cataract/MIM-607304.tab
A         misc/cataract/MIM-608810-AR.tab
A         misc/cataract/MIM-608810.tab
A         misc/cataract/MIM-610634.tab
A         misc/cataract/MIM-611597.tab
A         misc/excelfiles
A         misc/excelfiles/Analysis_Table.xls
A         misc/excelfiles/Analysis_Table_NEW_13-09-11.xls
A         misc/excelfiles/Analysis_novel_18-09-11.xls
A         misc/excelfiles/Prioritized DECIPHER_for_Annotation.xls
A         misc/excelfiles/Prioritized-Disease-List.xls
A         misc/excelfiles/candidates_alpha-3.xls
A         misc/helpscripts
A         misc/helpscripts/fixDate.pl
A         misc/makefile
A         misc_2018
A         misc_2018/.gitignore
A         misc_2018/makefile
A         obsoleted-entries
A         obsoleted-entries/OMIM-100640.tab
AU        obsoleted-entries/OMIM-100650.tab
A         obsoleted-entries/OMIM-100675.tab
A         obsoleted-entries/OMIM-134700.tab
A         obsoleted-entries/OMIM-144400.tab
A         obsoleted-entries/OMIM-146400.tab
A         obsoleted-entries/OMIM-180070.tab
A         obsoleted-entries/OMIM-181515.tab
A         obsoleted-entries/OMIM-216411.tab
A         obsoleted-entries/OMIM-233500.tab
A         obsoleted-entries/OMIM-271550.tab
A         obsoleted-entries/OMIM-277610.tab
A         obsoleted-entries/OMIM-277970.tab
A         obsoleted-entries/OMIM-300290.tab
A         obsoleted-entries/OMIM-300987.tab
A         obsoleted-entries/OMIM-306500.tab
A         obsoleted-entries/OMIM-307300.tab
A         obsoleted-entries/OMIM-308930.tab
A         obsoleted-entries/OMIM-311280.tab
A         obsoleted-entries/OMIM-312100.tab
A         obsoleted-entries/OMIM-312530.tab
A         obsoleted-entries/OMIM-312860.tab
A         obsoleted-entries/OMIM-315000.tab
A         obsoleted-entries/OMIM-605685.tab
A         obsoleted-entries/OMIM-608591.tab
A         obsoleted-entries/OMIM-608664.tab
A         obsoleted-entries/OMIM-608967.tab
A         obsoleted-entries/OMIM-610380.tab
A         obsoleted-entries/OMIM-612934.tab
A         obsoleted-entries/OMIM-614253.tab
A         obsoleted-entries/OMIM-615057.tab
A         obsoleted-entries/OMIM-616233.tab
At revision 5022
no change for https://github.com/monarch-initiative/hpo-annotation-data/trunk/rare-diseases since the previous build
[workspace] $ /bin/sh -xe /tmp/jenkins3318251463794276479.sh
+ make -C misc_2018
make: Entering directory '/var/lib/jenkins/jobs/hpo.annotations.2018/workspace/misc_2018'
mkdir -p data
# load orphanet data
wget -N -P data http://www.orphadata.org/data/xml/en_product4_HPO.xml
--2018-05-14 08:50:25--  http://www.orphadata.org/data/xml/en_product4_HPO.xml
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 27154644 (26M) [text/xml]
Saving to: ‘data/en_product4_HPO.xml’

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 10050K .......... .......... .......... .......... .......... 38% 37.7M 1s
 10100K .......... .......... .......... .......... .......... 38% 41.1M 1s
 10150K .......... .......... .......... .......... .......... 38% 39.5M 1s
 10200K .......... .......... .......... .......... .......... 38%  111M 1s
 10250K .......... .......... .......... .......... .......... 38% 41.2M 1s
 10300K .......... .......... .......... .......... .......... 39% 39.0M 1s
 10350K .......... .......... .......... .......... .......... 39% 37.8M 1s
 10400K .......... .......... .......... .......... .......... 39% 42.4M 1s
 10450K .......... .......... .......... .......... .......... 39%  103M 1s
 10500K .......... .......... .......... .......... .......... 39% 39.5M 1s
 10550K .......... .......... .......... .......... .......... 39% 33.8M 1s
 10600K .......... .......... .......... .......... .......... 40% 45.9M 1s
 10650K .......... .......... .......... .......... .......... 40% 39.1M 1s
 10700K .......... .......... .......... .......... .......... 40%  113M 1s
 10750K .......... .......... .......... .......... .......... 40% 35.6M 1s
 10800K .......... .......... .......... .......... .......... 40% 44.2M 1s
 10850K .......... .......... .......... .......... .......... 41% 41.1M 1s
 10900K .......... .......... .......... .......... .......... 41%  113M 1s
 10950K .......... .......... .......... .......... .......... 41% 37.2M 1s
 11000K .......... .......... .......... .......... .......... 41% 37.2M 1s
 11050K .......... .......... .......... .......... .......... 41% 36.0M 1s
 11100K .......... .......... .......... .......... .......... 42% 37.0M 1s
 11150K .......... .......... .......... .......... .......... 42%  113M 1s
 11200K .......... .......... .......... .......... .......... 42% 33.0M 1s
 11250K .......... .......... .......... .......... .......... 42% 37.3M 1s
 11300K .......... .......... .......... .......... .......... 42% 39.9M 1s
 11350K .......... .......... .......... .......... .......... 42% 36.1M 1s
 11400K .......... .......... .......... .......... .......... 43%  116M 1s
 11450K .......... .......... .......... .......... .......... 43% 32.0M 1s
 11500K .......... .......... .......... .......... .......... 43% 38.1M 1s
 11550K .......... .......... .......... .......... .......... 43% 37.2M 1s
 11600K .......... .......... .......... .......... .......... 43%  111M 1s
 11650K .......... .......... .......... .......... .......... 44% 31.1M 1s
 11700K .......... .......... .......... .......... .......... 44% 37.8M 1s
 11750K .......... .......... .......... .......... .......... 44% 42.1M 1s
 11800K .......... .......... .......... .......... .......... 44% 40.0M 1s
 11850K .......... .......... .......... .......... .......... 44%  100M 1s
 11900K .......... .......... .......... .......... .......... 45% 33.7M 1s
 11950K .......... .......... .......... .......... .......... 45% 23.7M 1s
 12000K .......... .......... .......... .......... .......... 45% 41.3M 1s
 12050K .......... .......... .......... .......... .......... 45% 36.0M 1s
 12100K .......... .......... .......... .......... .......... 45% 92.7M 1s
 12150K .......... .......... .......... .......... .......... 46% 44.5M 1s
 12200K .......... .......... .......... .......... .......... 46% 67.6M 1s
 12250K .......... .......... .......... .......... .......... 46% 61.3M 1s
 12300K .......... .......... .......... .......... .......... 46%  110M 1s
 12350K .......... .......... .......... .......... .......... 46% 63.5M 1s
 12400K .......... .......... .......... .......... .......... 46% 60.4M 1s
 12450K .......... .......... .......... .......... .......... 47% 94.2M 1s
 12500K .......... .......... .......... .......... .......... 47% 71.9M 1s
 12550K .......... .......... .......... .......... .......... 47%  102M 1s
 12600K .......... .......... .......... .......... .......... 47% 74.1M 1s
 12650K .......... .......... .......... .......... .......... 47% 73.0M 1s
 12700K .......... .......... .......... .......... .......... 48% 63.4M 1s
 12750K .......... .......... .......... .......... .......... 48%  113M 1s
 12800K .......... .......... .......... .......... .......... 48%  113M 1s
 12850K .......... .......... .......... .......... .......... 48% 71.7M 1s
 12900K .......... .......... .......... .......... .......... 48% 99.2M 1s
 12950K .......... .......... .......... .......... .......... 49% 71.7M 1s
 13000K .......... .......... .......... .......... .......... 49%  115M 1s
 13050K .......... .......... .......... .......... .......... 49% 61.1M 1s
 13100K .......... .......... .......... .......... .......... 49% 91.4M 1s
 13150K .......... .......... .......... .......... .......... 49% 66.4M 1s
 13200K .......... .......... .......... .......... .......... 49% 88.5M 1s
 13250K .......... .......... .......... .......... .......... 50%  101M 1s
 13300K .......... .......... .......... .......... .......... 50% 75.8M 1s
 13350K .......... .......... .......... .......... .......... 50% 80.3M 1s
 13400K .......... .......... .......... .......... .......... 50% 79.3M 1s
 13450K .......... .......... .......... .......... .......... 50% 86.1M 1s
 13500K .......... .......... .......... .......... .......... 51% 99.6M 1s
 13550K .......... .......... .......... .......... .......... 51% 97.0M 1s
 13600K .......... .......... .......... .......... .......... 51% 70.9M 1s
 13650K .......... .......... .......... .......... .......... 51%  112M 1s
 13700K .......... .......... .......... .......... .......... 51%  113M 1s
 13750K .......... .......... .......... .......... .......... 52% 70.0M 1s
 13800K .......... .......... .......... .......... .......... 52% 74.6M 1s
 13850K .......... .......... .......... .......... .......... 52%  112M 1s
 13900K .......... .......... .......... .......... .......... 52% 73.5M 1s
 13950K .......... .......... .......... .......... .......... 52%  113M 1s
 14000K .......... .......... .......... .......... .......... 52% 90.0M 1s
 14050K .......... .......... .......... .......... .......... 53% 72.1M 1s
 14100K .......... .......... .......... .......... .......... 53%  113M 1s
 14150K .......... .......... .......... .......... .......... 53% 76.9M 1s
 14200K .......... .......... .......... .......... .......... 53% 94.0M 1s
 14250K .......... .......... .......... .......... .......... 53%  113M 1s
 14300K .......... .......... .......... .......... .......... 54% 63.7M 1s
 14350K .......... .......... .......... .......... .......... 54% 97.9M 1s
 14400K .......... .......... .......... .......... .......... 54%  105M 1s
 14450K .......... .......... .......... .......... .......... 54% 67.6M 1s
 14500K .......... .......... .......... .......... .......... 54% 78.2M 1s
 14550K .......... .......... .......... .......... .......... 55%  113M 1s
 14600K .......... .......... .......... .......... .......... 55% 95.9M 1s
 14650K .......... .......... .......... .......... .......... 55% 99.3M 1s
 14700K .......... .......... .......... .......... .......... 55% 70.5M 1s
 14750K .......... .......... .......... .......... .......... 55% 86.7M 1s
 14800K .......... .......... .......... .......... .......... 55% 87.2M 1s
 14850K .......... .......... .......... .......... .......... 56% 86.7M 1s
 14900K .......... .......... .......... .......... .......... 56%  112M 1s
 14950K .......... .......... .......... .......... .......... 56% 80.1M 1s
 15000K .......... .......... .......... .......... .......... 56% 64.0M 1s
 15050K .......... .......... .......... .......... .......... 56% 69.8M 1s
 15100K .......... .......... .......... .......... .......... 57%  116M 1s
 15150K .......... .......... .......... .......... .......... 57% 14.9M 1s
 15200K .......... .......... .......... .......... .......... 57% 98.5M 1s
 15250K .......... .......... .......... .......... .......... 57% 62.1M 1s
 15300K .......... .......... .......... .......... .......... 57% 43.5M 1s
 15350K .......... .......... .......... .......... .......... 58% 81.5M 1s
 15400K .......... .......... .......... .......... .......... 58% 85.7M 1s
 15450K .......... .......... .......... .......... .......... 58% 66.2M 1s
 15500K .......... .......... .......... .......... .......... 58% 43.5M 1s
 15550K .......... .......... .......... .......... .......... 58% 59.7M 1s
 15600K .......... .......... .......... .......... .......... 59% 88.3M 1s
 15650K .......... .......... .......... .......... .......... 59% 72.2M 1s
 15700K .......... .......... .......... .......... .......... 59% 62.6M 1s
 15750K .......... .......... .......... .......... .......... 59% 46.8M 1s
 15800K .......... .......... .......... .......... .......... 59% 89.7M 1s
 15850K .......... .......... .......... .......... .......... 59% 89.7M 1s
 15900K .......... .......... .......... .......... .......... 60% 80.8M 1s
 15950K .......... .......... .......... .......... .......... 60% 52.4M 1s
 16000K .......... .......... .......... .......... .......... 60% 44.6M 1s
 16050K .......... .......... .......... .......... .......... 60% 77.1M 1s
 16100K .......... .......... .......... .......... .......... 60% 91.1M 1s
 16150K .......... .......... .......... .......... .......... 61%  103M 1s
 16200K .......... .......... .......... .......... .......... 61% 73.8M 1s
 16250K .......... .......... .......... .......... .......... 61% 67.2M 1s
 16300K .......... .......... .......... .......... .......... 61%  112M 1s
 16350K .......... .......... .......... .......... .......... 61% 82.0M 1s
 16400K .......... .......... .......... .......... .......... 62% 87.5M 1s
 16450K .......... .......... .......... .......... .......... 62% 97.5M 1s
 16500K .......... .......... .......... .......... .......... 62%  104M 1s
 16550K .......... .......... .......... .......... .......... 62% 89.1M 1s
 16600K .......... .......... .......... .......... .......... 62% 91.2M 1s
 16650K .......... .......... .......... .......... .......... 62% 96.3M 1s
 16700K .......... .......... .......... .......... .......... 63% 80.9M 1s
 16750K .......... .......... .......... .......... .......... 63% 95.2M 1s
 16800K .......... .......... .......... .......... .......... 63% 76.1M 1s
 16850K .......... .......... .......... .......... .......... 63%  104M 1s
 16900K .......... .......... .......... .......... .......... 63% 69.5M 1s
 16950K .......... .......... .......... .......... .......... 64%  103M 0s
 17000K .......... .......... .......... .......... .......... 64% 78.3M 0s
 17050K .......... .......... .......... .......... .......... 64% 43.6M 0s
 17100K .......... .......... .......... .......... .......... 64% 49.5M 0s
 17150K .......... .......... .......... .......... .......... 64% 9.25M 0s
 17200K .......... .......... .......... .......... .......... 65% 45.1M 0s
 17250K .......... .......... .......... .......... .......... 65% 33.9M 0s
 17300K .......... .......... .......... .......... .......... 65% 94.9M 0s
 17350K .......... .......... .......... .......... .......... 65% 79.6M 0s
 17400K .......... .......... .......... .......... .......... 65% 93.9M 0s
 17450K .......... .......... .......... .......... .......... 65% 79.7M 0s
 17500K .......... .......... .......... .......... .......... 66% 69.9M 0s
 17550K .......... .......... .......... .......... .......... 66% 81.0M 0s
 17600K .......... .......... .......... .......... .......... 66% 52.1M 0s
 17650K .......... .......... .......... .......... .......... 66% 43.9M 0s
 17700K .......... .......... .......... .......... .......... 66% 46.2M 0s
 17750K .......... .......... .......... .......... .......... 67%  109M 0s
 17800K .......... .......... .......... .......... .......... 67% 79.7M 0s
 17850K .......... .......... .......... .......... .......... 67% 40.4M 0s
 17900K .......... .......... .......... .......... .......... 67% 62.1M 0s
 17950K .......... .......... .......... .......... .......... 67% 98.7M 0s
 18000K .......... .......... .......... .......... .......... 68%  109M 0s
 18050K .......... .......... .......... .......... .......... 68% 23.8M 0s
 18100K .......... .......... .......... .......... .......... 68% 89.5M 0s
 18150K .......... .......... .......... .......... .......... 68% 44.4M 0s
 18200K .......... .......... .......... .......... .......... 68% 59.1M 0s
 18250K .......... .......... .......... .......... .......... 69% 75.8M 0s
 18300K .......... .......... .......... .......... .......... 69% 85.2M 0s
 18350K .......... .......... .......... .......... .......... 69% 75.8M 0s
 18400K .......... .......... .......... .......... .......... 69%  107M 0s
 18450K .......... .......... .......... .......... .......... 69% 58.6M 0s
 18500K .......... .......... .......... .......... .......... 69%  120M 0s
 18550K .......... .......... .......... .......... .......... 70% 63.5M 0s
 18600K .......... .......... .......... .......... .......... 70% 87.7M 0s
 18650K .......... .......... .......... .......... .......... 70%  107M 0s
 18700K .......... .......... .......... .......... .......... 70% 44.6M 0s
 18750K .......... .......... .......... .......... .......... 70% 77.7M 0s
 18800K .......... .......... .......... .......... .......... 71%  122M 0s
 18850K .......... .......... .......... .......... .......... 71% 94.5M 0s
 18900K .......... .......... .......... .......... .......... 71% 76.2M 0s
 18950K .......... .......... .......... .......... .......... 71% 96.7M 0s
 19000K .......... .......... .......... .......... .......... 71% 99.8M 0s
 19050K .......... .......... .......... .......... .......... 72% 85.1M 0s
 19100K .......... .......... .......... .......... .......... 72% 62.8M 0s
 19150K .......... .......... .......... .......... .......... 72%  106M 0s
 19200K .......... .......... .......... .......... .......... 72%  108M 0s
 19250K .......... .......... .......... .......... .......... 72% 73.3M 0s
 19300K .......... .......... .......... .......... .......... 72% 24.4M 0s
 19350K .......... .......... .......... .......... .......... 73% 18.3M 0s
 19400K .......... .......... .......... .......... .......... 73% 61.0M 0s
 19450K .......... .......... .......... .......... .......... 73% 78.0M 0s
 19500K .......... .......... .......... .......... .......... 73% 85.5M 0s
 19550K .......... .......... .......... .......... .......... 73% 65.5M 0s
 19600K .......... .......... .......... .......... .......... 74% 82.9M 0s
 19650K .......... .......... .......... .......... .......... 74% 66.9M 0s
 19700K .......... .......... .......... .......... .......... 74% 84.6M 0s
 19750K .......... .......... .......... .......... .......... 74% 63.4M 0s
 19800K .......... .......... .......... .......... .......... 74%  102M 0s
 19850K .......... .......... .......... .......... .......... 75% 99.5M 0s
 19900K .......... .......... .......... .......... .......... 75% 60.1M 0s
 19950K .......... .......... .......... .......... .......... 75% 44.1M 0s
 20000K .......... .......... .......... .......... .......... 75% 86.8M 0s
 20050K .......... .......... .......... .......... .......... 75%  101M 0s
 20100K .......... .......... .......... .......... .......... 75% 68.1M 0s
 20150K .......... .......... .......... .......... .......... 76% 79.3M 0s
 20200K .......... .......... .......... .......... .......... 76% 23.3M 0s
 20250K .......... .......... .......... .......... .......... 76% 67.8M 0s
 20300K .......... .......... .......... .......... .......... 76%  117M 0s
 20350K .......... .......... .......... .......... .......... 76% 46.9M 0s
 20400K .......... .......... .......... .......... .......... 77% 95.9M 0s
 20450K .......... .......... .......... .......... .......... 77% 85.9M 0s
 20500K .......... .......... .......... .......... .......... 77% 79.1M 0s
 20550K .......... .......... .......... .......... .......... 77% 82.6M 0s
 20600K .......... .......... .......... .......... .......... 77% 80.7M 0s
 20650K .......... .......... .......... .......... .......... 78% 91.0M 0s
 20700K .......... .......... .......... .......... .......... 78% 79.8M 0s
 20750K .......... .......... .......... .......... .......... 78% 49.8M 0s
 20800K .......... .......... .......... .......... .......... 78% 76.4M 0s
 20850K .......... .......... .......... .......... .......... 78% 82.8M 0s
 20900K .......... .......... .......... .......... .......... 79% 66.3M 0s
 20950K .......... .......... .......... .......... .......... 79% 82.6M 0s
 21000K .......... .......... .......... .......... .......... 79% 87.5M 0s
 21050K .......... .......... .......... .......... .......... 79% 85.9M 0s
 21100K .......... .......... .......... .......... .......... 79% 37.8M 0s
 21150K .......... .......... .......... .......... .......... 79%  103M 0s
 21200K .......... .......... .......... .......... .......... 80% 85.2M 0s
 21250K .......... .......... .......... .......... .......... 80%  119M 0s
 21300K .......... .......... .......... .......... .......... 80%  105M 0s
 21350K .......... .......... .......... .......... .......... 80% 86.7M 0s
 21400K .......... .......... .......... .......... .......... 80%  110M 0s
 21450K .......... .......... .......... .......... .......... 81% 85.4M 0s
 21500K .......... .......... .......... .......... .......... 81% 64.8M 0s
 21550K .......... .......... .......... .......... .......... 81% 83.4M 0s
 21600K .......... .......... .......... .......... .......... 81% 17.6M 0s
 21650K .......... .......... .......... .......... .......... 81% 39.6M 0s
 21700K .......... .......... .......... .......... .......... 82% 77.4M 0s
 21750K .......... .......... .......... .......... .......... 82% 88.6M 0s
 21800K .......... .......... .......... .......... .......... 82%  103M 0s
 21850K .......... .......... .......... .......... .......... 82% 81.3M 0s
 21900K .......... .......... .......... .......... .......... 82% 91.4M 0s
 21950K .......... .......... .......... .......... .......... 82% 61.8M 0s
 22000K .......... .......... .......... .......... .......... 83% 52.9M 0s
 22050K .......... .......... .......... .......... .......... 83% 81.4M 0s
 22100K .......... .......... .......... .......... .......... 83%  100M 0s
 22150K .......... .......... .......... .......... .......... 83% 90.5M 0s
 22200K .......... .......... .......... .......... .......... 83% 93.4M 0s
 22250K .......... .......... .......... .......... .......... 84% 71.9M 0s
 22300K .......... .......... .......... .......... .......... 84% 97.3M 0s
 22350K .......... .......... .......... .......... .......... 84% 34.5M 0s
 22400K .......... .......... .......... .......... .......... 84%  102M 0s
 22450K .......... .......... .......... .......... .......... 84% 62.5M 0s
 22500K .......... .......... .......... .......... .......... 85% 46.7M 0s
 22550K .......... .......... .......... .......... .......... 85% 69.5M 0s
 22600K .......... .......... .......... .......... .......... 85% 51.2M 0s
 22650K .......... .......... .......... .......... .......... 85% 48.5M 0s
 22700K .......... .......... .......... .......... .......... 85% 70.4M 0s
 22750K .......... .......... .......... .......... .......... 85% 99.5M 0s
 22800K .......... .......... .......... .......... .......... 86% 84.1M 0s
 22850K .......... .......... .......... .......... .......... 86% 88.6M 0s
 22900K .......... .......... .......... .......... .......... 86% 91.7M 0s
 22950K .......... .......... .......... .......... .......... 86% 76.8M 0s
 23000K .......... .......... .......... .......... .......... 86% 34.8M 0s
 23050K .......... .......... .......... .......... .......... 87% 70.0M 0s
 23100K .......... .......... .......... .......... .......... 87% 91.3M 0s
 23150K .......... .......... .......... .......... .......... 87% 79.0M 0s
 23200K .......... .......... .......... .......... .......... 87%  109M 0s
 23250K .......... .......... .......... .......... .......... 87% 56.9M 0s
 23300K .......... .......... .......... .......... .......... 88%  118M 0s
 23350K .......... .......... .......... .......... .......... 88% 59.9M 0s
 23400K .......... .......... .......... .......... .......... 88% 74.4M 0s
 23450K .......... .......... .......... .......... .......... 88% 98.1M 0s
 23500K .......... .......... .......... .......... .......... 88% 84.1M 0s
 23550K .......... .......... .......... .......... .......... 88%  110M 0s
 23600K .......... .......... .......... .......... .......... 89%  116M 0s
 23650K .......... .......... .......... .......... .......... 89% 74.0M 0s
 23700K .......... .......... .......... .......... .......... 89%  103M 0s
 23750K .......... .......... .......... .......... .......... 89% 89.4M 0s
 23800K .......... .......... .......... .......... .......... 89% 87.4M 0s
 23850K .......... .......... .......... .......... .......... 90% 94.7M 0s
 23900K .......... .......... .......... .......... .......... 90% 92.7M 0s
 23950K .......... .......... .......... .......... .......... 90% 31.1M 0s
 24000K .......... .......... .......... .......... .......... 90% 22.3M 0s
 24050K .......... .......... .......... .......... .......... 90% 81.7M 0s
 24100K .......... .......... .......... .......... .......... 91% 65.9M 0s
 24150K .......... .......... .......... .......... .......... 91% 91.6M 0s
 24200K .......... .......... .......... .......... .......... 91% 89.6M 0s
 24250K .......... .......... .......... .......... .......... 91% 99.8M 0s
 24300K .......... .......... .......... .......... .......... 91%  122M 0s
 24350K .......... .......... .......... .......... .......... 92% 81.0M 0s
 24400K .......... .......... .......... .......... .......... 92%  108M 0s
 24450K .......... .......... .......... .......... .......... 92% 93.1M 0s
 24500K .......... .......... .......... .......... .......... 92% 84.1M 0s
 24550K .......... .......... .......... .......... .......... 92% 76.1M 0s
 24600K .......... .......... .......... .......... .......... 92% 64.6M 0s
 24650K .......... .......... .......... .......... .......... 93% 74.0M 0s
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 25450K .......... .......... .......... .......... .......... 96% 98.2M 0s
 25500K .......... .......... .......... .......... .......... 96% 72.0M 0s
 25550K .......... .......... .......... .......... .......... 96% 95.3M 0s
 25600K .......... .......... .......... .......... .......... 96% 90.1M 0s
 25650K .......... .......... .......... .......... .......... 96% 64.7M 0s
 25700K .......... .......... .......... .......... .......... 97% 57.2M 0s
 25750K .......... .......... .......... .......... .......... 97% 69.1M 0s
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 25850K .......... .......... .......... .......... .......... 97% 71.7M 0s
 25900K .......... .......... .......... .......... .......... 97% 85.6M 0s
 25950K .......... .......... .......... .......... .......... 98%  119M 0s
 26000K .......... .......... .......... .......... .......... 98% 89.3M 0s
 26050K .......... .......... .......... .......... .......... 98% 45.9M 0s
 26100K .......... .......... .......... .......... .......... 98%  107M 0s
 26150K .......... .......... .......... .......... .......... 98% 70.8M 0s
 26200K .......... .......... .......... .......... .......... 98%  104M 0s
 26250K .......... .......... .......... .......... .......... 99% 94.8M 0s
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 26350K .......... .......... .......... .......... .......... 99% 81.0M 0s
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 26450K .......... .......... .......... .......... .......... 99% 45.5M 0s
 26500K .......... ........                                   100% 27.9M=1.0s

2018-05-14 08:50:26 (25.1 MB/s) - ‘data/en_product4_HPO.xml’ saved [27154644/27154644]

# loads the HPO
wget -N -P data http://purl.obolibrary.org/obo/hp.obo
--2018-05-14 08:50:26--  http://purl.obolibrary.org/obo/hp.obo
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 302 Found
Location: https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo [following]
--2018-05-14 08:50:27--  https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 5909799 (5.6M) [text/plain]
Saving to: ‘data/hp.obo’

     0K .......... .......... .......... .......... ..........  0% 1.49M 4s
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  5450K .......... .......... .......... .......... .......... 95% 26.7M 0s
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  5750K .......... .......... .                               100% 17.9M=0.5s

Last-modified header missing -- time-stamps turned off.
2018-05-14 08:50:27 (11.1 MB/s) - ‘data/hp.obo’ saved [5909799/5909799]

mkdir -p jar
wget -N -P jar https://github.com/monarch-initiative/hpoannotqc/releases/download/v0.2.3/HpoAnnotQc.jar
--2018-05-14 08:50:27--  https://github.com/monarch-initiative/hpoannotqc/releases/download/v0.2.3/HpoAnnotQc.jar
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 302 Found
Location: https://github-production-release-asset-2e65be.s3.amazonaws.com/120038140/a146bd18-3000-11e8-81cb-af4b1ecb3ea5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180514%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20180514T065053Z&X-Amz-Expires=300&X-Amz-Signature=1fa94b1219c73a50d29afc135bdf8e2008121621797836079b79bfb40645faac&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DHpoAnnotQc.jar&response-content-type=application%2Foctet-stream [following]
--2018-05-14 08:50:28--  https://github-production-release-asset-2e65be.s3.amazonaws.com/120038140/a146bd18-3000-11e8-81cb-af4b1ecb3ea5?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Credential=AKIAIWNJYAX4CSVEH53A%2F20180514%2Fus-east-1%2Fs3%2Faws4_request&X-Amz-Date=20180514T065053Z&X-Amz-Expires=300&X-Amz-Signature=1fa94b1219c73a50d29afc135bdf8e2008121621797836079b79bfb40645faac&X-Amz-SignedHeaders=host&actor_id=0&response-content-disposition=attachment%3B%20filename%3DHpoAnnotQc.jar&response-content-type=application%2Foctet-stream
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 17649361 (17M) [application/octet-stream]
Saving to: ‘jar/HpoAnnotQc.jar’

     0K .......... .......... .......... .......... ..........  0%  155K 1m51s
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  4500K .......... .......... .......... .......... .......... 26%  102M 6s
  4550K .......... .......... .......... .......... .......... 26%  100M 6s
  4600K .......... .......... .......... .......... .......... 26% 74.6M 6s
  4650K .......... .......... .......... .......... .......... 27% 95.8M 6s
  4700K .......... .......... .......... .......... .......... 27%  107M 6s
  4750K .......... .......... .......... .......... .......... 27% 73.8M 6s
  4800K .......... .......... .......... .......... .......... 28% 95.4M 6s
  4850K .......... .......... .......... .......... .......... 28% 42.7M 5s
  4900K .......... .......... .......... .......... .......... 28% 98.5M 5s
  4950K .......... .......... .......... .......... .......... 29%  102M 5s
  5000K .......... .......... .......... .......... .......... 29% 84.1M 5s
  5050K .......... .......... .......... .......... .......... 29% 95.7M 5s
  5100K .......... .......... .......... .......... .......... 29%  103M 5s
  5150K .......... .......... .......... .......... .......... 30% 97.0M 5s
  5200K .......... .......... .......... .......... .......... 30% 96.9M 5s
  5250K .......... .......... .......... .......... .......... 30% 86.8M 5s
  5300K .......... .......... .......... .......... .......... 31% 1.27M 5s
  5350K .......... .......... .......... .......... .......... 31% 43.0M 5s
  5400K .......... .......... .......... .......... .......... 31%  861K 5s
  5450K .......... .......... .......... .......... .......... 31% 89.7M 5s
  5500K .......... .......... .......... .......... .......... 32% 71.2M 5s
  5550K .......... .......... .......... .......... .......... 32% 66.8M 5s
  5600K .......... .......... .......... .......... .......... 32% 93.3M 5s
  5650K .......... .......... .......... .......... .......... 33%  105M 5s
  5700K .......... .......... .......... .......... .......... 33% 98.1M 5s
  5750K .......... .......... .......... .......... .......... 33%  101M 4s
  5800K .......... .......... .......... .......... .......... 33% 85.2M 4s
  5850K .......... .......... .......... .......... .......... 34% 98.7M 4s
  5900K .......... .......... .......... .......... .......... 34%  101M 4s
  5950K .......... .......... .......... .......... .......... 34%  105M 4s
  6000K .......... .......... .......... .......... .......... 35% 97.0M 4s
  6050K .......... .......... .......... .......... .......... 35%  105M 4s
  6100K .......... .......... .......... .......... .......... 35%  102M 4s
  6150K .......... .......... .......... .......... .......... 35%  103M 4s
  6200K .......... .......... .......... .......... .......... 36% 81.5M 4s
  6250K .......... .......... .......... .......... .......... 36% 96.8M 4s
  6300K .......... .......... .......... .......... .......... 36%  106M 4s
  6350K .......... .......... .......... .......... .......... 37%  105M 4s
  6400K .......... .......... .......... .......... .......... 37% 77.0M 4s
  6450K .......... .......... .......... .......... .......... 37% 1.35M 4s
  6500K .......... .......... .......... .......... .......... 38% 81.1M 4s
  6550K .......... .......... .......... .......... .......... 38%  837K 4s
  6600K .......... .......... .......... .......... .......... 38% 74.1M 4s
  6650K .......... .......... .......... .......... .......... 38% 94.8M 4s
  6700K .......... .......... .......... .......... .......... 39% 80.0M 4s
  6750K .......... .......... .......... .......... .......... 39%  102M 4s
  6800K .......... .......... .......... .......... .......... 39% 92.4M 4s
  6850K .......... .......... .......... .......... .......... 40%  102M 4s
  6900K .......... .......... .......... .......... .......... 40%  104M 4s
  6950K .......... .......... .......... .......... .......... 40% 98.4M 3s
  7000K .......... .......... .......... .......... .......... 40% 80.4M 3s
  7050K .......... .......... .......... .......... .......... 41% 98.0M 3s
  7100K .......... .......... .......... .......... .......... 41% 99.0M 3s
  7150K .......... .......... .......... .......... .......... 41% 36.8M 3s
  7200K .......... .......... .......... .......... .......... 42% 82.3M 3s
  7250K .......... .......... .......... .......... .......... 42%  100M 3s
  7300K .......... .......... .......... .......... .......... 42%  104M 3s
  7350K .......... .......... .......... .......... .......... 42%  106M 3s
  7400K .......... .......... .......... .......... .......... 43% 60.4M 3s
  7450K .......... .......... .......... .......... .......... 43% 98.8M 3s
  7500K .......... .......... .......... .......... .......... 43%  108M 3s
  7550K .......... .......... .......... .......... .......... 44% 94.6M 3s
  7600K .......... .......... .......... .......... .......... 44% 96.0M 3s
  7650K .......... .......... .......... .......... .......... 44% 99.3M 3s
  7700K .......... .......... .......... .......... .......... 44%  105M 3s
  7750K .......... .......... .......... .......... .......... 45% 98.3M 3s
  7800K .......... .......... .......... .......... .......... 45% 1.44M 3s
  7850K .......... .......... .......... .......... .......... 45% 77.3M 3s
  7900K .......... .......... .......... .......... .......... 46%  844K 3s
  7950K .......... .......... .......... .......... .......... 46% 76.0M 3s
  8000K .......... .......... .......... .......... .......... 46% 81.9M 3s
  8050K .......... .......... .......... .......... .......... 46% 94.4M 3s
  8100K .......... .......... .......... .......... .......... 47% 96.3M 3s
  8150K .......... .......... .......... .......... .......... 47% 58.2M 3s
  8200K .......... .......... .......... .......... .......... 47% 57.3M 3s
  8250K .......... .......... .......... .......... .......... 48% 76.4M 3s
  8300K .......... .......... .......... .......... .......... 48% 97.4M 3s
  8350K .......... .......... .......... .......... .......... 48% 95.6M 3s
  8400K .......... .......... .......... .......... .......... 49% 88.0M 3s
  8450K .......... .......... .......... .......... .......... 49% 92.4M 3s
  8500K .......... .......... .......... .......... .......... 49% 97.0M 3s
  8550K .......... .......... .......... .......... .......... 49%  106M 3s
  8600K .......... .......... .......... .......... .......... 50% 82.6M 2s
  8650K .......... .......... .......... .......... .......... 50%  102M 2s
  8700K .......... .......... .......... .......... .......... 50%  104M 2s
  8750K .......... .......... .......... .......... .......... 51% 99.4M 2s
  8800K .......... .......... .......... .......... .......... 51% 97.1M 2s
  8850K .......... .......... .......... .......... .......... 51%  102M 2s
  8900K .....                                                  51% 39.6M=2.5s


Cannot write to ‘jar/HpoAnnotQc.jar’ (No space left on device).
makefile:29: recipe for target 'load-external' failed
make: *** [load-external] Error 3
make: Leaving directory '/var/lib/jenkins/jobs/hpo.annotations.2018/workspace/misc_2018'
Build step 'Execute shell' marked build as failure
Archiving artifacts
Sending e-mails to: sebastian.koehler@charite.de peter.robinson@jax.org
ERROR: 452 4.3.1 Insufficient system storage

com.sun.mail.smtp.SMTPSendFailedException: 452 4.3.1 Insufficient system storage

	at com.sun.mail.smtp.SMTPTransport.issueSendCommand(SMTPTransport.java:2057)
	at com.sun.mail.smtp.SMTPTransport.mailFrom(SMTPTransport.java:1580)