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Changes

#5087 (Jul 14, 2019 7:59:49 PM)

  1. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  2. update — pnrobinson / detail
  3. updates — peter.robinson / detail
  4. updates — peter.robinson / detail
  5. updated — peter.robinson / detail

#5085 (Jul 9, 2019 12:16:55 AM)

  1. correcting annotations — pnrobinson / detail
  2. new entries — peter.robinson / detail
  3. new entries — peter.robinson / detail
  4. new entries — peter.robinson / detail
  5. stickler type 2 — peter.robinson / detail
  6. additions and new diseases — peter.robinson / detail

#5084 (Jul 3, 2019 10:34:14 PM)

  1. correcting format errors — pnrobinson / detail
  2. adding annotations — pnrobinson / detail
  3. adding annotations — pnrobinson / detail

#5083 (Jun 13, 2019 7:08:03 PM)

  1. Updating annotations — pnrobinson / detail
  2. updating labels — pnrobinson / detail

#5082 (Jun 3, 2019 1:31:25 PM)

  1. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  2. updates — pnrobinson / detail
  3. add annotations to Noonan SYndrome #7 — leigh / detail
  4. update — pnrobinson / detail
  5. susceptibility — pnrobinson / detail
  6. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  7. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  8. update — pnrobinson / detail
  9. update — pnrobinson / detail
  10. updated makefile to hpoannotqc version 1.4.3 — pnrobinson / detail
  11. updating labels — pnrobinson / detail

#5081 (May 22, 2019 7:13:31 PM)

  1. adding new file 618440 — pnrobinson / detail
  2. Merge pull request #348 from monarch-initiative/OMIM-227650

    update annotations for OMIM-227650 — peter.robinson / detail
  3. fixing errors from my last commit, removed annotation to bifid thumb and added back the annotation to infertility that was accidentally deleted. — nicolevasilevsky / detail

#5080 (May 18, 2019 3:51:07 AM)

  1. update — pnrobinson / detail
  2. updating frequencies — pnrobinson / detail
  3. add new annotation to OMIM:227650 — nicolevasilevsky / detail
  4. new EDS annotations — pnrobinson / detail
  5. update — pnrobinson / detail
  6. update — pnrobinson / detail
  7. update — pnrobinson / detail
  8. update — pnrobinson / detail
  9. update — pnrobinson / detail
  10. update — pnrobinson / detail
  11. legacy entries — pnrobinson / detail
  12. updates — pnrobinson / detail
  13. new annotations — pnrobinson / detail
  14. update — pnrobinson / detail
  15. Added inheritance for MIM:613944 — leigh / detail
  16. updates — pnrobinson / detail
  17. obsoleting 4 moved-to entries — pnrobinson / detail
  18. updates — pnrobinson / detail
  19. Merge pull request #336 from monarch-initiative/annotation_updates_april2019

    add annotation updates — sebastian.k.hler / detail
  20. add annotation updates — drseb / detail
  21. new entries april 2019 — drseb / detail
  22. updates — pnrobinson / detail
  23. fix bug — drseb / detail
  24. fix bug in curator-list format

    closes https://github.com/obophenotype/human-phenotype-ontology/issues/4710 — drseb / detail
  25. Updating Kleefstra2 — pnrobinson / detail
  26. updates — pnrobinson / detail

#5079 (Apr 15, 2019 1:28:36 PM)

  1. update — pnrobinson / detail
  2. updates — pnrobinson / detail

#5078 (Apr 12, 2019 9:54:48 PM)

  1. update — pnrobinson / detail
  2. marge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  3. updating annotations — pnrobinson / detail
  4. fix errors.

    empty file
    annotation to obsolete HPO class — drseb / detail
  5. updates — pnrobinson / detail
  6. omit entries — pnrobinson / detail
  7. Merge pull request #326 from monarch-initiative/inhertanceAnnotations

    add inheritance annotations — peter.robinson / detail
  8. add inheritance annotations

    related to
    https://github.com/monarch-initiative/hpo-annotation-data/issues/292 — drseb / detail
  9. update annotations for OMIM-614080 — nicolevasilevsky / detail
  10. update annotations for OMIM-614080 — nicolevasilevsky / detail
  11. update annotations for OMIM-239000 — nicolevasilevsky / detail
  12. update annotations for OMIM-610293 — nicolevasilevsky / detail
  13. update annotation for OMIM-280000 — nicolevasilevsky / detail
  14. update annotations for OMIM-617599 — nicolevasilevsky / detail
  15. add new annotations to OMIM-618010 — nicolevasilevsky / detail
  16. add annotations to OMIM-617816 — nicolevasilevsky / detail
  17. add annotations to OMIM-300868 — nicolevasilevsky / detail
  18. revise annotation for OMIM-616809 — nicolevasilevsky / detail
  19. add new annotations to OMIM-615042 — nicolevasilevsky / detail
  20. Merge branch 'master' of github.com:monarch-initiative/hpo-annotation-data — nicolevasilevsky / detail
  21. update annotation for OMIM-151660. Addresses https://github.com/monarch-initiative/mondo/issues/98 — nicole.vasilevsky / detail
  22. update annotations — nicole.vasilevsky / detail
  23. update annotations — nicole.vasilevsky / detail
  24. update anontations — nicole.vasilevsky / detail
  25. move entry to correct place

    closes https://github.com/monarch-initiative/hpo-annotation-data/issues/325 — drseb / detail
  26. updating annotations — pnrobinson / detail
  27. omitting HUMAN HERPESVIRUS TYPE 6, INTEGRATED — chris.mungall / detail
  28. update inheritance annotations — nicole.vasilevsky / detail
  29. updated inheritance annotations — nicole.vasilevsky / detail
  30. Merge branch 'master' of github.com:monarch-initiative/hpo-annotation-data — nicole.vasilevsky / detail
  31. update annotations — nicole.vasilevsky / detail
  32. updates — pnrobinson / detail
  33. annotation updates — pnrobinson / detail
  34. update annotations — nicole.vasilevsky / detail
  35. update annotations — nicole.vasilevsky / detail
  36. update annotations for OMIM-600771 — nicole.vasilevsky / detail
  37. update annotation for OMIM-121270 — nicole.vasilevsky / detail
  38. updated annotations for OMIM-617520 — nicole.vasilevsky / detail
  39. updated OMIM-268000 — nicole.vasilevsky / detail
  40. remove Cerebral cortical atrophy from OMIM-174000. Closes #313 — nicole.vasilevsky / detail
  41. updates — pnrobinson / detail
  42. annotation updates — pnrobinson / detail
  43. updating annotations — pnrobinson / detail
  44. updating annotations — pnrobinson / detail
  45. updating annotations — pnrobinson / detail
  46. updating annotations — pnrobinson / detail
  47. updating annotations — pnrobinson / detail
  48. update — pnrobinson / detail
  49. update — pnrobinson / detail
  50. Merge pull request #305 from monarch-initiative/issue-292c

    updated annotations. addresses #292 — nicole.vasilevsky / detail
  51. updated annotations. addresses #292 — nicole.vasilevsky / detail
  52. updating annotations — pnrobinson / detail
  53. updated annotations to OMIM-617571 — nicole.vasilevsky / detail
  54. add new annotations to OMIM-618106 — nicole.vasilevsky / detail
  55. add new annotations to OMIM-617571 — nicole.vasilevsky / detail
  56. add new annotation to OMIM-617520 — nicole.vasilevsky / detail
  57. add new annotation to OMIM-617800 — nicole.vasilevsky / detail
  58. add new annotation to OMIM-617800 — nicole.vasilevsky / detail
  59. update evidence code for OMIM-617800 — nicole.vasilevsky / detail
  60. updated annotation for OMIM-181500 — nicole.vasilevsky / detail
  61. added new annotations to two files — nicole.vasilevsky / detail
  62. updated annotations for two files — nicole.vasilevsky / detail
  63. append the annotations from last update run

    as discussed via virtual meeting last week — drseb / detail
  64. updating annotations — pnrobinson / detail
  65. updating annotations — pnrobinson / detail
  66. adding phenotype omit list — pnrobinson / detail
  67. Removing phenotypic variability terms — pnrobinson / detail
  68. New annotations — pnrobinson / detail
  69. Updating CDL3 annotations — pnrobinson / detail
  70. revising annotations and moving moved entries — pnrobinson / detail
  71. updating annotations — pnrobinson / detail
  72. fixing format errors — pnrobinson / detail
  73. updating ids — pnrobinson / detail
  74. updating labels — pnrobinson / detail
  75. add new files

    to be checked briefly wrt to omit list etc. — drseb / detail
  76. omit — pnrobinson / detail
  77. Updating annotation — pnrobinson / detail
  78. adding obsoleted entry — pnrobinson / detail
  79. updating annotations — pnrobinson / detail

#5077 (Feb 12, 2019 3:05:06 PM)

  1. updating annotation — pnrobinson / detail
  2. updating annotations — pnrobinson / detail
  3. Updating annotations — pnrobinson / detail
  4. adding new phenotyes — pnrobinson / detail
  5. adding entries to omit list — pnrobinson / detail
  6. Update OMIM:616814 — leigh / detail
  7. Update OMIM:603678, OMIM:615674. #269 — leigh / detail
  8. Update OMIM:603098. Reference #269 — leigh / detail
  9. Update OMIM:616407 — leigh / detail
  10. updating annotations — pnrobinson / detail
  11. updating annotations — pnrobinson / detail
  12. Updating annotation — pnrobinson / detail
  13. new disease file — pnrobinson / detail
  14. new entry — pnrobinson / detail
  15. updating issues from tracker — pnrobinson / detail
  16. updating annotations — pnrobinson / detail
  17. Adding to omit list — pnrobinson / detail

#5076 (Jan 21, 2019 6:03:45 PM)

  1. Updating some annotations for Pierpont syndrome (frequencies) — pnrobinson / detail
  2. Updating — pnrobinson / detail
  3. updating diseases with few annotations — pnrobinson / detail
  4. Adding frequencies to 616118 — pnrobinson / detail
  5. Adding frequencies to 615513 — pnrobinson / detail
  6. more frequencies — pnrobinson / detail

#5075 (Jan 17, 2019 5:39:53 PM)

  1. updating omit list — pnrobinson / detail
  2. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  3. updating 612431 — pnrobinson / detail
  4. updating 612642 — pnrobinson / detail
  5. Merge branch 'master' into fix-male-femala — peter.robinson / detail
  6. Fix MALE/FEMALE to LC — drseb / detail
  7. fix Male/Female to LC — drseb / detail
  8. Updating annotation for 613392 — pnrobinson / detail
  9. repairing format errors — pnrobinson / detail
  10. fixing various format errors and updating obsolete ids — pnrobinson / detail
  11. fixing various format errors — pnrobinson / detail
  12. fixing various format errors — pnrobinson / detail
  13. fixing biocuration format error — pnrobinson / detail
  14. Updating changed labels — pnrobinson / detail
  15. fixing format errors with frequency terms — pnrobinson / detail

#5074 (Jan 3, 2019 10:39:44 AM)

  1. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  2. updating makefile — pnrobinson / detail
  3. Update OMIM:269700. Close #255 — leigh / detail
  4. Updated OMIM:269150. #247 — leigh / detail
  5. Update OMIM:122020. Close #254. — leigh / detail
  6. Add annotations to OMIM:126840 — leigh / detail

#5073 (Dec 21, 2018 11:53:13 AM)

  1. fix more obsolete annotations — drseb / detail
  2. fix obsolete annotations — drseb / detail
  3. fix error

    closes https://github.com/monarch-initiative/hpo-annotation-data/issues/256 — drseb / detail
  4. Added OMIM:618143 with frequencies. — leigh / detail
  5. beginning curation of PIGS — pnrobinson / detail
  6. updating annotations — pnrobinson / detail
  7. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  8. Updating hpoannotQC version — pnrobinson / detail
  9. Update OMIM:223350 — leigh / detail
  10. Adding new annotation file — pnrobinson / detail
  11. added additional annotations to OMIM:140850 — nicole.vasilevsky / detail
  12. Deleted Periodic hyperkalemic paralysis from OMIM:170400 — leigh / detail
  13. added Hemimegalencephaly to diseases.  Close #239 — leigh / detail
  14. Update Loeys-Dietz with Eosinophilic infiltration of the esophagus. — leigh / detail
  15. Updating labels — pnrobinson / detail
  16. Update OMIM:154500, OMIM:200300, OMIM:600252, OMIM:601471, OMIM:610090 #214 — leigh / detail
  17. Updated feature — pnrobinson / detail
  18. fix broken PMID curie — tomconlin / detail

#5072 (Oct 9, 2018 9:59:43 AM)

  1. fix error caught by nicks software — drseb / detail

#5071 (Oct 9, 2018 9:54:29 AM)

  1. fix wrong annotation to obsolete class — drseb / detail
  2. Annotation updates of existing entries — drseb / detail
  3. Annotation updates of existing entries — drseb / detail
  4. Annotation updates of existing entries — drseb / detail
  5. Annotation updates of existing entries — drseb / detail
  6. Annotation updates of existing entries — drseb / detail
  7. Annotation updates of existing entries — drseb / detail
  8. Major annotation update - new entries — drseb / detail
  9. new freqeuncy — pnrobinson / detail
  10. Update OMIM:236400, OMIM:613270 #208 — leigh / detail
  11. Update OMIM:151610, OMIM:269160, OMIM:615896. #208 — leigh / detail
  12. Update OMIM:186750, OMIM:603829 #208 — leigh / detail
  13. strange entry with wrong id in annotation — drseb / detail
  14. Update OMIM:162820 and OMIM:182170 — leigh / detail
  15. Update OMIM:131400, OMIM:161600, OMIM:610265 — leigh / detail
  16. Update OMIM:139600, OMIM:147430 — leigh / detail
  17. Update OMIM:177050, OMIM:614266 #208 — leigh / detail
  18. Update OMIM:228400, OMIM:251505 — leigh / detail
  19. Update OMIM:613953, OMIM:611572 — leigh / detail
  20. Update OMIM:175750, OMIM:604091, OMIM:613285 — leigh / detail
  21. Update OMIM:183400, OMIM:244850, and OMIM:616780. #208 — leigh / detail
  22. Update OMIM:604093 #208 — leigh / detail
  23. Update OMIM:131430 — leigh / detail
  24. Update OMIM:131430 #208 — leigh / detail
  25. Update OMIM:609153 #208 — leigh / detail
  26. Update OMIM:166900 and OMIM:254450. #208 — leigh / detail
  27. Update OMIM:219550 — leigh / detail
  28. Update OMIM:180550 — leigh / detail
  29. Update OMIM:600852 #208 — leigh / detail
  30. Update OMIM:136480 #208 — leigh / detail
  31. Update OMIM:164230 #208 — leigh / detail
  32. Update OMIM:164230 — leigh / detail
  33. Update OMIM:100820 #208 — leigh / detail
  34. Update OMIM:615072 — leigh / detail
  35. Update OMIM:155350. #208 — leigh / detail
  36. Update OMIM:147330 #208 — leigh / detail
  37. Update OMIM:609647 — leigh / detail
  38. Update OMIM:614372 #208 — leigh / detail
  39. Add annotations to OMIM:271225.  #208 — leigh / detail
  40. 2 new entries — pnrobinson / detail
  41. Update OMIM:235730.  Note: despite several tries, I could not add a frequency of 50.0% to misalignment of teeth. Close #203 — leigh / detail
  42. Update handlebar clavicle in multiple disease files. — leigh / detail
  43. Update OMIM:206200. Close #200 — leigh / detail
  44. UPDATE OMIM:125853 and OMIM:601665. Close #194 — leigh / detail
  45. Update OMIM:146200, OMIM:188400, OMIM:240300. Reference #193 — leigh / detail
  46. Update OMIM:106210. Close #199 — leigh / detail
  47. Update OMIM:182290. Close #196 — leigh / detail
  48. Update OMIM:234100. #214 — leigh / detail
  49. Update OMIM:260565. #214 — leigh / detail
  50. aarskog — pnrobinson / detail
  51. adding more traits — pnrobinson / detail
  52. Update OMIM:615224. Close #188 — leigh / detail
  53. Update OMIM 179700 — leigh / detail
  54. Merge pull request #240 from monarch-initiative/issue-236

    Read to merge: added additional phenotypes (Focal cortical dysplasia) — peter.robinson / detail
  55. updating phenotypes
    addresses #236 — nicole.vasilevsky / detail
  56. added additional phenotypes (Focal cortical dysplasia)
    addresses #236 — nicole.vasilevsky / detail
  57. Galactosialidosis update — pnrobinson / detail
  58. updating — pnrobinson / detail
  59. Update OMIM:243110. #214 — leigh / detail
  60. Update OMIM:125640. #214 — leigh / detail
  61. Update OMIM:209950. #214 — leigh / detail
  62. Updated OMIM:617384. #214 — leigh / detail
  63. cleft chin is a trait

    https://omim.org/entry/119000

    VM entry from 1986, barely touched — chris.mungall / detail
  64. updating annotations for congenital visual impairment — pnrobinson / detail
  65. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data

    ommit. — pnrobinson / detail
  66. updating annotations for total cataract — pnrobinson / detail
  67. Merge pull request #233 from monarch-initiative/OMIM-139500

    Omim 139500 — peter.robinson / detail
  68. added new annotations — nicole.vasilevsky / detail
  69. added additional annotions — nicole.vasilevsky / detail
  70. updated annotations per issue https://github.com/obophenotype/human-phenotype-ontology/issues/3731. — nicole.vasilevsky / detail
  71. updating annotations for congenital strabismus — pnrobinson / detail
  72. updating labels — pnrobinson / detail
  73. Merge pull request #228 from monarch-initiative/cmungall-patch-2

    Making filename a link — peter.robinson / detail
  74. Making filename a link — chris.mungall / detail
  75. Merge pull request #227 from monarch-initiative/cmungall-patch-1

    Adding homosexuality to omit list — peter.robinson / detail
  76. Adding homosexuality to omit list

    Not a disease — chris.mungall / detail
  77. Delete ignore_for_annotation.txt

    Superseded by omit-list.txt — chris.mungall / detail
  78. this should work now — drseb / detail
  79. fix curator-stats generation — drseb / detail
  80. Merge pull request #224 from monarch-initiative/issue-222

    added new annotations — sebastian.k.hler / detail
  81. added new annotations
    closes #222 — nicole.vasilevsky / detail
  82. Merge branch 'master' into OMIM_615612 — sebastian.k.hler / detail
  83. Merge branch 'master' into OMIM_231630 — sebastian.k.hler / detail
  84. added additional annotations — nicole.vasilevsky / detail
  85. added additional annotations — nicole.vasilevsky / detail
  86. add new entry for gene-phenotype-link — drseb / detail

#5070 (Jul 25, 2018 9:15:28 AM)

  1. Updated makefile for HpoAnnotQc integration — pnrobinson / detail
  2. Correcting missing publication ids — pnrobinson / detail
  3. Updating DECIPHER entries — pnrobinson / detail
  4. Updating biocuration format — pnrobinson / detail
  5. Updating 613857 — pnrobinson / detail
  6. updating annotations — pnrobinson / detail
  7. Adding new annotations — pnrobinson / detail
  8. Updating annotations — pnrobinson / detail
  9. updated BDAB annots — pnrobinson / detail
  10. Adding back 300373 — pnrobinson / detail
  11. revising and adding annotations — pnrobinson / detail
  12. update — pnrobinson / detail
  13. Modifying 181000 — pnrobinson / detail
  14. adding 617926 — pnrobinson / detail
  15. adding 617925 — pnrobinson / detail
  16. revising omit list — pnrobinson / detail
  17. more omit list items — pnrobinson / detail
  18. Removing 302300, which moved to 302200 — pnrobinson / detail
  19. updating annotations — pnrobinson / detail
  20. more entries for omit-list — pnrobinson / detail
  21. UOX is a pseudogene with no activity in man, therefore there is no associated disease — pnrobinson / detail
  22. moving 189990, a gene entry not associated with a Mendelian disease — pnrobinson / detail
  23. obsoleting 176960, a gene entry with no connection to Mendelian disease — pnrobinson / detail
  24. Update MIM:190900. #208 — leigh / detail
  25. Update OMIM:615441. #208 — leigh / detail
  26. Update OMIM:613370. #208 — leigh / detail
  27. Update OMIM:128980. #208 — leigh / detail
  28. Update OMIM:608565. #208. — leigh / detail
  29. Update OMIM:611493. #208 — leigh / detail
  30. Update OMIM:177400. #208 — leigh / detail
  31. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data

    * 'master' of https://github.com/monarch-initiative/hpo-annotation-data:
      Updating outdated labels
      repairing frequency syntax errors
      updating labels — leigh / detail
  32. Update OMIM:609135. #208 — leigh / detail
  33. Updating outdated labels — pnrobinson / detail
  34. repairing frequency syntax errors — pnrobinson / detail
  35. updating labels — pnrobinson / detail
  36. Update OMIM:246000. #208 — leigh / detail
  37. Update OMIM:108800 — leigh / detail
  38. Update OMIM:602092. #208 — leigh / detail
  39. Update OMIM:137360.  #208 — leigh / detail
  40. update EL annotations — pnrobinson / detail
  41. update — pnrobinson / detail
  42. Update OMIM:137920. #214 — leigh / detail
  43. Update OMIM:219800. #214 — leigh / detail
  44. Update OMIM:615745. #208. — leigh / detail
  45. Update OMIM:609939. #208 — leigh / detail
  46. Updated OMIM:123320. #208 — leigh / detail
  47. Update OMIM:128300. #208 — leigh / detail
  48. Adding new annot — pnrobinson / detail
  49. updating annotations — pnrobinson / detail

#5069 (Jun 13, 2018 10:18:23 PM)

  1. Merge pull request #210 from monarch-initiative/OMIM_180295

    added additional annotations — nicole.vasilevsky / detail
  2. added additional annotations — nicole.vasilevsky / detail
  3. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data

    * 'master' of https://github.com/monarch-initiative/hpo-annotation-data:
      added new annotation — leigh / detail
  4. Update OMIM:601202. #208 — leigh / detail
  5. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — nicole.vasilevsky / detail
  6. Update OMIM:610753. #208 — leigh / detail
  7. added new annotation — nicole.vasilevsky / detail
  8. Updated OMIM:187260. #208 — leigh / detail
  9. Update OMIM:313500 annotations — leigh / detail
  10. Update OMIM:615413. #208. — leigh / detail
  11. Added OMIM:137130 to the omit-list.txt. Fixed typo in ignore_for_annotation.txt.  Added annotations for OMIM-607453 Autosomal dominant deafness. Reference #208 — leigh / detail
  12. new disease — pnrobinson / detail
  13. obsoleting 189980, a gene entry — pnrobinson / detail
  14. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  15. revising omit list — pnrobinson / detail
  16. obsoleting 151440, this is not a Mendelian disease and the connection to somatic mutations and cancer is tenuous — pnrobinson / detail
  17. updating 615861 — pnrobinson / detail
  18. adding entires to omit list — pnrobinson / detail
  19. correcting lower case omim — pnrobinson / detail
  20. moving 151441, a gene entry — pnrobinson / detail
  21. moving 109560, a gene entry — pnrobinson / detail
  22. new annotations — pnrobinson / detail
  23. new entry: 617808 — pnrobinson / detail
  24. updating annotation — pnrobinson / detail