SuccessConsole Output

Started by upstream project "hpo.annotations" build number 1252
originally caused by:
 Started by user koehler
Building in workspace /var/lib/jenkins/jobs/hpo.annotations.monthly/workspace
Cleaning local Directory .
Checking out https://github.com/monarch-initiative/hpo-annotation-data/trunk/util@HEAD at revision HEAD
A         annotation
A         annotation/.gitignore
A         annotation/external_data.txt
A         annotation/makefile
A         tools
A         tools/hpo_mysqldb
A         tools/hpo_mysqldb/schemabackup_2010-06-18.sql
At revision 4861
[workspace] $ /bin/sh -xe /tmp/jenkins3567270766169280455.sh
+ make -C annotation
make: Entering directory '/var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation'
mkdir -p data
#some cleanup beforehand
rm -f data/hp.obo
rm -f data/phenotype_annotation.tab
rm -f data/mim2*
mkdir -p jar
wget -N -P jar https://github.com/Phenomics/hpo-build-jars/raw/master/createGene2Phenotype.jar
--2018-03-09 09:07:02--  https://github.com/Phenomics/hpo-build-jars/raw/master/createGene2Phenotype.jar
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 302 Found
Location: https://raw.githubusercontent.com/Phenomics/hpo-build-jars/master/createGene2Phenotype.jar [following]
--2018-03-09 09:07:03--  https://raw.githubusercontent.com/Phenomics/hpo-build-jars/master/createGene2Phenotype.jar
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 10421735 (9.9M) [application/octet-stream]
Saving to: ‘jar/createGene2Phenotype.jar’

     0K .......... .......... .......... .......... ..........  0% 1.88M 5s
    50K .......... .......... .......... .......... ..........  0% 5.59M 3s
   100K .......... .......... .......... .......... ..........  1% 11.1M 3s
   150K .......... .......... .......... .......... ..........  1% 9.25M 2s
   200K .......... .......... .......... .......... ..........  2% 16.5M 2s
   250K .......... .......... .......... .......... ..........  2% 22.4M 2s
   300K .......... .......... .......... .......... ..........  3% 21.1M 1s
   350K .......... .......... .......... .......... ..........  3% 5.63M 1s
   400K .......... .......... .......... .......... ..........  4% 34.0M 1s
   450K .......... .......... .......... .......... ..........  4% 21.2M 1s
   500K .......... .......... .......... .......... ..........  5% 7.73M 1s
   550K .......... .......... .......... .......... ..........  5% 31.7M 1s
   600K .......... .......... .......... .......... ..........  6% 14.0M 1s
   650K .......... .......... .......... .......... ..........  6% 12.7M 1s
   700K .......... .......... .......... .......... ..........  7% 13.1M 1s
   750K .......... .......... .......... .......... ..........  7% 16.9M 1s
   800K .......... .......... .......... .......... ..........  8% 11.3M 1s
   850K .......... .......... .......... .......... ..........  8% 2.37M 1s
   900K .......... .......... .......... .......... ..........  9% 3.73M 1s
   950K .......... .......... .......... .......... ..........  9% 51.2M 1s
  1000K .......... .......... .......... .......... .......... 10% 50.3M 1s
  1050K .......... .......... .......... .......... .......... 10% 48.5M 1s
  1100K .......... .......... .......... .......... .......... 11% 50.3M 1s
  1150K .......... .......... .......... .......... .......... 11% 37.9M 1s
  1200K .......... .......... .......... .......... .......... 12% 58.8M 1s
  1250K .......... .......... .......... .......... .......... 12% 58.2M 1s
  1300K .......... .......... .......... .......... .......... 13% 55.8M 1s
  1350K .......... .......... .......... .......... .......... 13% 16.4M 1s
  1400K .......... .......... .......... .......... .......... 14% 20.3M 1s
  1450K .......... .......... .......... .......... .......... 14% 11.9M 1s
  1500K .......... .......... .......... .......... .......... 15% 6.62M 1s
  1550K .......... .......... .......... .......... .......... 15% 2.90M 1s
  1600K .......... .......... .......... .......... .......... 16% 59.3M 1s
  1650K .......... .......... .......... .......... .......... 16% 71.0M 1s
  1700K .......... .......... .......... .......... .......... 17% 11.0M 1s
  1750K .......... .......... .......... .......... .......... 17% 6.02M 1s
  1800K .......... .......... .......... .......... .......... 18% 19.9M 1s
  1850K .......... .......... .......... .......... .......... 18% 4.94M 1s
  1900K .......... .......... .......... .......... .......... 19% 10.0M 1s
  1950K .......... .......... .......... .......... .......... 19% 7.39M 1s
  2000K .......... .......... .......... .......... .......... 20% 8.41M 1s
  2050K .......... .......... .......... .......... .......... 20% 8.85M 1s
  2100K .......... .......... .......... .......... .......... 21% 9.80M 1s
  2150K .......... .......... .......... .......... .......... 21% 10.5M 1s
  2200K .......... .......... .......... .......... .......... 22% 8.18M 1s
  2250K .......... .......... .......... .......... .......... 22% 10.0M 1s
  2300K .......... .......... .......... .......... .......... 23% 7.05M 1s
  2350K .......... .......... .......... .......... .......... 23% 10.5M 1s
  2400K .......... .......... .......... .......... .......... 24% 9.06M 1s
  2450K .......... .......... .......... .......... .......... 24% 9.20M 1s
  2500K .......... .......... .......... .......... .......... 25% 9.21M 1s
  2550K .......... .......... .......... .......... .......... 25% 9.10M 1s
  2600K .......... .......... .......... .......... .......... 26% 8.29M 1s
  2650K .......... .......... .......... .......... .......... 26% 10.5M 1s
  2700K .......... .......... .......... .......... .......... 27% 16.1M 1s
  2750K .......... .......... .......... .......... .......... 27% 6.23M 1s
  2800K .......... .......... .......... .......... .......... 28% 6.72M 1s
  2850K .......... .......... .......... .......... .......... 28% 14.1M 1s
  2900K .......... .......... .......... .......... .......... 28% 9.27M 1s
  2950K .......... .......... .......... .......... .......... 29% 9.05M 1s
  3000K .......... .......... .......... .......... .......... 29% 14.5M 1s
  3050K .......... .......... .......... .......... .......... 30% 7.27M 1s
  3100K .......... .......... .......... .......... .......... 30% 12.1M 1s
  3150K .......... .......... .......... .......... .......... 31% 7.46M 1s
  3200K .......... .......... .......... .......... .......... 31% 9.90M 1s
  3250K .......... .......... .......... .......... .......... 32% 9.65M 1s
  3300K .......... .......... .......... .......... .......... 32% 10.3M 1s
  3350K .......... .......... .......... .......... .......... 33% 9.92M 1s
  3400K .......... .......... .......... .......... .......... 33% 7.61M 1s
  3450K .......... .......... .......... .......... .......... 34% 13.7M 1s
  3500K .......... .......... .......... .......... .......... 34% 11.1M 1s
  3550K .......... .......... .......... .......... .......... 35% 7.04M 1s
  3600K .......... .......... .......... .......... .......... 35% 11.4M 1s
  3650K .......... .......... .......... .......... .......... 36% 9.00M 1s
  3700K .......... .......... .......... .......... .......... 36% 10.1M 1s
  3750K .......... .......... .......... .......... .......... 37% 9.14M 1s
  3800K .......... .......... .......... .......... .......... 37% 11.7M 1s
  3850K .......... .......... .......... .......... .......... 38% 13.3M 1s
  3900K .......... .......... .......... .......... .......... 38% 7.38M 1s
  3950K .......... .......... .......... .......... .......... 39% 7.23M 1s
  4000K .......... .......... .......... .......... .......... 39% 11.4M 1s
  4050K .......... .......... .......... .......... .......... 40% 13.2M 1s
  4100K .......... .......... .......... .......... .......... 40% 8.92M 1s
  4150K .......... .......... .......... .......... .......... 41% 11.6M 1s
  4200K .......... .......... .......... .......... .......... 41% 9.10M 1s
  4250K .......... .......... .......... .......... .......... 42% 14.4M 1s
  4300K .......... .......... .......... .......... .......... 42% 8.04M 1s
  4350K .......... .......... .......... .......... .......... 43% 9.02M 1s
  4400K .......... .......... .......... .......... .......... 43% 9.37M 1s
  4450K .......... .......... .......... .......... .......... 44% 13.5M 1s
  4500K .......... .......... .......... .......... .......... 44% 7.44M 1s
  4550K .......... .......... .......... .......... .......... 45% 13.7M 1s
  4600K .......... .......... .......... .......... .......... 45% 14.3M 1s
  4650K .......... .......... .......... .......... .......... 46% 9.31M 1s
  4700K .......... .......... .......... .......... .......... 46% 13.7M 1s
  4750K .......... .......... .......... .......... .......... 47% 8.66M 1s
  4800K .......... .......... .......... .......... .......... 47% 12.6M 1s
  4850K .......... .......... .......... .......... .......... 48% 7.24M 1s
  4900K .......... .......... .......... .......... .......... 48% 12.5M 1s
  4950K .......... .......... .......... .......... .......... 49% 11.1M 1s
  5000K .......... .......... .......... .......... .......... 49% 11.6M 1s
  5050K .......... .......... .......... .......... .......... 50% 11.7M 1s
  5100K .......... .......... .......... .......... .......... 50% 8.44M 1s
  5150K .......... .......... .......... .......... .......... 51% 11.1M 1s
  5200K .......... .......... .......... .......... .......... 51% 9.39M 0s
  5250K .......... .......... .......... .......... .......... 52% 9.54M 0s
  5300K .......... .......... .......... .......... .......... 52% 16.1M 0s
  5350K .......... .......... .......... .......... .......... 53% 8.54M 0s
  5400K .......... .......... .......... .......... .......... 53% 12.8M 0s
  5450K .......... .......... .......... .......... .......... 54% 9.07M 0s
  5500K .......... .......... .......... .......... .......... 54% 13.8M 0s
  5550K .......... .......... .......... .......... .......... 55% 8.96M 0s
  5600K .......... .......... .......... .......... .......... 55% 11.5M 0s
  5650K .......... .......... .......... .......... .......... 56% 7.51M 0s
  5700K .......... .......... .......... .......... .......... 56% 12.8M 0s
  5750K .......... .......... .......... .......... .......... 56% 12.5M 0s
  5800K .......... .......... .......... .......... .......... 57% 10.5M 0s
  5850K .......... .......... .......... .......... .......... 57% 12.5M 0s
  5900K .......... .......... .......... .......... .......... 58% 8.85M 0s
  5950K .......... .......... .......... .......... .......... 58% 10.2M 0s
  6000K .......... .......... .......... .......... .......... 59% 18.8M 0s
  6050K .......... .......... .......... .......... .......... 59% 6.07M 0s
  6100K .......... .......... .......... .......... .......... 60% 10.6M 0s
  6150K .......... .......... .......... .......... .......... 60% 11.7M 0s
  6200K .......... .......... .......... .......... .......... 61% 10.5M 0s
  6250K .......... .......... .......... .......... .......... 61% 13.3M 0s
  6300K .......... .......... .......... .......... .......... 62% 8.80M 0s
  6350K .......... .......... .......... .......... .......... 62% 9.36M 0s
  6400K .......... .......... .......... .......... .......... 63% 23.2M 0s
  6450K .......... .......... .......... .......... .......... 63% 6.04M 0s
  6500K .......... .......... .......... .......... .......... 64% 16.9M 0s
  6550K .......... .......... .......... .......... .......... 64% 9.07M 0s
  6600K .......... .......... .......... .......... .......... 65% 17.6M 0s
  6650K .......... .......... .......... .......... .......... 65% 12.2M 0s
  6700K .......... .......... .......... .......... .......... 66% 8.78M 0s
  6750K .......... .......... .......... .......... .......... 66% 12.1M 0s
  6800K .......... .......... .......... .......... .......... 67% 21.4M 0s
  6850K .......... .......... .......... .......... .......... 67% 8.32M 0s
  6900K .......... .......... .......... .......... .......... 68% 11.1M 0s
  6950K .......... .......... .......... .......... .......... 68% 10.8M 0s
  7000K .......... .......... .......... .......... .......... 69% 9.37M 0s
  7050K .......... .......... .......... .......... .......... 69% 16.3M 0s
  7100K .......... .......... .......... .......... .......... 70% 12.6M 0s
  7150K .......... .......... .......... .......... .......... 70% 9.02M 0s
  7200K .......... .......... .......... .......... .......... 71% 16.4M 0s
  7250K .......... .......... .......... .......... .......... 71% 6.97M 0s
  7300K .......... .......... .......... .......... .......... 72% 17.6M 0s
  7350K .......... .......... .......... .......... .......... 72% 9.53M 0s
  7400K .......... .......... .......... .......... .......... 73% 15.4M 0s
  7450K .......... .......... .......... .......... .......... 73% 8.59M 0s
  7500K .......... .......... .......... .......... .......... 74% 16.8M 0s
  7550K .......... .......... .......... .......... .......... 74% 12.1M 0s
  7600K .......... .......... .......... .......... .......... 75% 12.0M 0s
  7650K .......... .......... .......... .......... .......... 75% 11.0M 0s
  7700K .......... .......... .......... .......... .......... 76% 7.79M 0s
  7750K .......... .......... .......... .......... .......... 76% 18.7M 0s
  7800K .......... .......... .......... .......... .......... 77% 12.1M 0s
  7850K .......... .......... .......... .......... .......... 77% 9.27M 0s
  7900K .......... .......... .......... .......... .......... 78% 21.0M 0s
  7950K .......... .......... .......... .......... .......... 78% 10.4M 0s
  8000K .......... .......... .......... .......... .......... 79% 12.5M 0s
  8050K .......... .......... .......... .......... .......... 79% 8.91M 0s
  8100K .......... .......... .......... .......... .......... 80% 10.3M 0s
  8150K .......... .......... .......... .......... .......... 80% 19.5M 0s
  8200K .......... .......... .......... .......... .......... 81% 10.1M 0s
  8250K .......... .......... .......... .......... .......... 81% 12.7M 0s
  8300K .......... .......... .......... .......... .......... 82% 10.9M 0s
  8350K .......... .......... .......... .......... .......... 82% 9.98M 0s
  8400K .......... .......... .......... .......... .......... 83% 13.6M 0s
  8450K .......... .......... .......... .......... .......... 83% 16.8M 0s
  8500K .......... .......... .......... .......... .......... 84% 6.10M 0s
  8550K .......... .......... .......... .......... .......... 84% 10.8M 0s
  8600K .......... .......... .......... .......... .......... 84% 13.9M 0s
  8650K .......... .......... .......... .......... .......... 85% 2.97M 0s
  8700K .......... .......... .......... .......... .......... 85% 31.8M 0s
  8750K .......... .......... .......... .......... .......... 86% 33.4M 0s
  8800K .......... .......... .......... .......... .......... 86% 34.5M 0s
  8850K .......... .......... .......... .......... .......... 87% 5.39M 0s
  8900K .......... .......... .......... .......... .......... 87% 9.69M 0s
  8950K .......... .......... .......... .......... .......... 88% 7.64M 0s
  9000K .......... .......... .......... .......... .......... 88% 7.93M 0s
  9050K .......... .......... .......... .......... .......... 89% 6.99M 0s
  9100K .......... .......... .......... .......... .......... 89% 12.2M 0s
  9150K .......... .......... .......... .......... .......... 90% 6.53M 0s
  9200K .......... .......... .......... .......... .......... 90% 9.37M 0s
  9250K .......... .......... .......... .......... .......... 91% 6.69M 0s
  9300K .......... .......... .......... .......... .......... 91% 9.79M 0s
  9350K .......... .......... .......... .......... .......... 92% 9.64M 0s
  9400K .......... .......... .......... .......... .......... 92% 6.95M 0s
  9450K .......... .......... .......... .......... .......... 93% 13.4M 0s
  9500K .......... .......... .......... .......... .......... 93% 7.00M 0s
  9550K .......... .......... .......... .......... .......... 94% 9.85M 0s
  9600K .......... .......... .......... .......... .......... 94% 7.52M 0s
  9650K .......... .......... .......... .......... .......... 95% 7.94M 0s
  9700K .......... .......... .......... .......... .......... 95% 8.71M 0s
  9750K .......... .......... .......... .......... .......... 96% 9.96M 0s
  9800K .......... .......... .......... .......... .......... 96% 9.50M 0s
  9850K .......... .......... .......... .......... .......... 97% 10.3M 0s
  9900K .......... .......... .......... .......... .......... 97% 8.52M 0s
  9950K .......... .......... .......... .......... .......... 98% 9.97M 0s
 10000K .......... .......... .......... .......... .......... 98% 8.15M 0s
 10050K .......... .......... .......... .......... .......... 99% 8.69M 0s
 10100K .......... .......... .......... .......... .......... 99% 8.97M 0s
 10150K .......... .......... .......                         100% 27.0M=1.0s

Last-modified header missing -- time-stamps turned off.
2018-03-09 09:07:04 (9.88 MB/s) - ‘jar/createGene2Phenotype.jar’ saved [10421735/10421735]

wget -N -P jar https://github.com/Phenomics/hpo-build-jars/raw/master/createMysqlHPODbVersion.jar
--2018-03-09 09:07:04--  https://github.com/Phenomics/hpo-build-jars/raw/master/createMysqlHPODbVersion.jar
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 302 Found
Location: https://raw.githubusercontent.com/Phenomics/hpo-build-jars/master/createMysqlHPODbVersion.jar [following]
--2018-03-09 09:07:04--  https://raw.githubusercontent.com/Phenomics/hpo-build-jars/master/createMysqlHPODbVersion.jar
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 11363315 (11M) [application/octet-stream]
Saving to: ‘jar/createMysqlHPODbVersion.jar’

     0K .......... .......... .......... .......... ..........  0% 2.06M 5s
    50K .......... .......... .......... .......... ..........  0% 4.53M 4s
   100K .......... .......... .......... .......... ..........  1% 14.6M 3s
   150K .......... .......... .......... .......... ..........  1% 6.66M 2s
   200K .......... .......... .......... .......... ..........  2% 10.5M 2s
   250K .......... .......... .......... .......... ..........  2% 6.07M 2s
   300K .......... .......... .......... .......... ..........  3% 11.0M 2s
   350K .......... .......... .......... .......... ..........  3% 10.2M 2s
   400K .......... .......... .......... .......... ..........  4% 9.77M 2s
   450K .......... .......... .......... .......... ..........  4% 8.62M 2s
   500K .......... .......... .......... .......... ..........  4% 11.8M 2s
   550K .......... .......... .......... .......... ..........  5% 12.3M 2s
   600K .......... .......... .......... .......... ..........  5% 8.11M 1s
   650K .......... .......... .......... .......... ..........  6% 10.7M 1s
   700K .......... .......... .......... .......... ..........  6% 9.76M 1s
   750K .......... .......... .......... .......... ..........  7% 9.72M 1s
   800K .......... .......... .......... .......... ..........  7% 20.1M 1s
   850K .......... .......... .......... .......... ..........  8% 10.3M 1s
   900K .......... .......... .......... .......... ..........  8% 11.9M 1s
   950K .......... .......... .......... .......... ..........  9% 10.6M 1s
  1000K .......... .......... .......... .......... ..........  9% 15.3M 1s
  1050K .......... .......... .......... .......... ..........  9% 7.07M 1s
  1100K .......... .......... .......... .......... .......... 10% 20.2M 1s
  1150K .......... .......... .......... .......... .......... 10% 12.9M 1s
  1200K .......... .......... .......... .......... .......... 11% 11.1M 1s
  1250K .......... .......... .......... .......... .......... 11% 16.9M 1s
  1300K .......... .......... .......... .......... .......... 12% 13.1M 1s
  1350K .......... .......... .......... .......... .......... 12% 20.7M 1s
  1400K .......... .......... .......... .......... .......... 13% 11.4M 1s
  1450K .......... .......... .......... .......... .......... 13% 12.2M 1s
  1500K .......... .......... .......... .......... .......... 13% 11.8M 1s
  1550K .......... .......... .......... .......... .......... 14% 10.3M 1s
  1600K .......... .......... .......... .......... .......... 14% 52.5M 1s
  1650K .......... .......... .......... .......... .......... 15% 16.0M 1s
  1700K .......... .......... .......... .......... .......... 15% 11.1M 1s
  1750K .......... .......... .......... .......... .......... 16% 18.5M 1s
  1800K .......... .......... .......... .......... .......... 16% 25.1M 1s
  1850K .......... .......... .......... .......... .......... 17% 11.1M 1s
  1900K .......... .......... .......... .......... .......... 17% 11.9M 1s
  1950K .......... .......... .......... .......... .......... 18% 24.5M 1s
  2000K .......... .......... .......... .......... .......... 18% 19.7M 1s
  2050K .......... .......... .......... .......... .......... 18% 13.0M 1s
  2100K .......... .......... .......... .......... .......... 19% 16.3M 1s
  2150K .......... .......... .......... .......... .......... 19% 22.4M 1s
  2200K .......... .......... .......... .......... .......... 20% 14.1M 1s
  2250K .......... .......... .......... .......... .......... 20% 15.7M 1s
  2300K .......... .......... .......... .......... .......... 21% 16.6M 1s
  2350K .......... .......... .......... .......... .......... 21% 22.0M 1s
  2400K .......... .......... .......... .......... .......... 22% 14.6M 1s
  2450K .......... .......... .......... .......... .......... 22% 19.5M 1s
  2500K .......... .......... .......... .......... .......... 22% 20.4M 1s
  2550K .......... .......... .......... .......... .......... 23% 29.9M 1s
  2600K .......... .......... .......... .......... .......... 23% 14.6M 1s
  2650K .......... .......... .......... .......... .......... 24% 10.4M 1s
  2700K .......... .......... .......... .......... .......... 24% 16.9M 1s
  2750K .......... .......... .......... .......... .......... 25% 59.1M 1s
  2800K .......... .......... .......... .......... .......... 25% 14.1M 1s
  2850K .......... .......... .......... .......... .......... 26% 28.1M 1s
  2900K .......... .......... .......... .......... .......... 26% 18.1M 1s
  2950K .......... .......... .......... .......... .......... 27% 30.3M 1s
  3000K .......... .......... .......... .......... .......... 27% 25.1M 1s
  3050K .......... .......... .......... .......... .......... 27% 13.3M 1s
  3100K .......... .......... .......... .......... .......... 28% 16.9M 1s
  3150K .......... .......... .......... .......... .......... 28% 29.2M 1s
  3200K .......... .......... .......... .......... .......... 29% 17.3M 1s
  3250K .......... .......... .......... .......... .......... 29% 33.3M 1s
  3300K .......... .......... .......... .......... .......... 30% 24.9M 1s
  3350K .......... .......... .......... .......... .......... 30% 16.5M 1s
  3400K .......... .......... .......... .......... .......... 31% 15.8M 1s
  3450K .......... .......... .......... .......... .......... 31% 21.9M 1s
  3500K .......... .......... .......... .......... .......... 31% 43.5M 1s
  3550K .......... .......... .......... .......... .......... 32% 13.2M 1s
  3600K .......... .......... .......... .......... .......... 32% 54.9M 1s
  3650K .......... .......... .......... .......... .......... 33% 22.9M 1s
  3700K .......... .......... .......... .......... .......... 33% 15.3M 1s
  3750K .......... .......... .......... .......... .......... 34% 52.8M 1s
  3800K .......... .......... .......... .......... .......... 34% 33.4M 1s
  3850K .......... .......... .......... .......... .......... 35% 15.8M 1s
  3900K .......... .......... .......... .......... .......... 35% 15.7M 1s
  3950K .......... .......... .......... .......... .......... 36% 44.6M 1s
  4000K .......... .......... .......... .......... .......... 36% 27.5M 1s
  4050K .......... .......... .......... .......... .......... 36% 27.4M 1s
  4100K .......... .......... .......... .......... .......... 37% 17.4M 0s
  4150K .......... .......... .......... .......... .......... 37% 30.8M 0s
  4200K .......... .......... .......... .......... .......... 38% 21.6M 0s
  4250K .......... .......... .......... .......... .......... 38% 32.4M 0s
  4300K .......... .......... .......... .......... .......... 39% 26.2M 0s
  4350K .......... .......... .......... .......... .......... 39% 20.0M 0s
  4400K .......... .......... .......... .......... .......... 40% 28.6M 0s
  4450K .......... .......... .......... .......... .......... 40% 32.8M 0s
  4500K .......... .......... .......... .......... .......... 41% 26.9M 0s
  4550K .......... .......... .......... .......... .......... 41% 25.7M 0s
  4600K .......... .......... .......... .......... .......... 41% 29.8M 0s
  4650K .......... .......... .......... .......... .......... 42% 21.2M 0s
  4700K .......... .......... .......... .......... .......... 42% 23.1M 0s
  4750K .......... .......... .......... .......... .......... 43% 23.1M 0s
  4800K .......... .......... .......... .......... .......... 43% 26.3M 0s
  4850K .......... .......... .......... .......... .......... 44% 95.0M 0s
  4900K .......... .......... .......... .......... .......... 44% 25.0M 0s
  4950K .......... .......... .......... .......... .......... 45% 49.5M 0s
  5000K .......... .......... .......... .......... .......... 45% 21.3M 0s
  5050K .......... .......... .......... .......... .......... 45% 20.3M 0s
  5100K .......... .......... .......... .......... .......... 46% 51.3M 0s
  5150K .......... .......... .......... .......... .......... 46% 23.5M 0s
  5200K .......... .......... .......... .......... .......... 47% 32.1M 0s
  5250K .......... .......... .......... .......... .......... 47% 26.1M 0s
  5300K .......... .......... .......... .......... .......... 48% 65.5M 0s
  5350K .......... .......... .......... .......... .......... 48% 14.8M 0s
  5400K .......... .......... .......... .......... .......... 49% 50.2M 0s
  5450K .......... .......... .......... .......... .......... 49% 22.8M 0s
  5500K .......... .......... .......... .......... .......... 50% 27.8M 0s
  5550K .......... .......... .......... .......... .......... 50% 55.1M 0s
  5600K .......... .......... .......... .......... .......... 50% 47.5M 0s
  5650K .......... .......... .......... .......... .......... 51% 51.9M 0s
  5700K .......... .......... .......... .......... .......... 51% 14.4M 0s
  5750K .......... .......... .......... .......... .......... 52% 42.5M 0s
  5800K .......... .......... .......... .......... .......... 52% 24.9M 0s
  5850K .......... .......... .......... .......... .......... 53% 42.9M 0s
  5900K .......... .......... .......... .......... .......... 53% 59.5M 0s
  5950K .......... .......... .......... .......... .......... 54% 34.1M 0s
  6000K .......... .......... .......... .......... .......... 54% 16.1M 0s
  6050K .......... .......... .......... .......... .......... 54% 65.2M 0s
  6100K .......... .......... .......... .......... .......... 55% 38.5M 0s
  6150K .......... .......... .......... .......... .......... 55% 36.1M 0s
  6200K .......... .......... .......... .......... .......... 56% 27.8M 0s
  6250K .......... .......... .......... .......... .......... 56% 46.5M 0s
  6300K .......... .......... .......... .......... .......... 57% 39.7M 0s
  6350K .......... .......... .......... .......... .......... 57% 59.6M 0s
  6400K .......... .......... .......... .......... .......... 58% 15.3M 0s
  6450K .......... .......... .......... .......... .......... 58% 42.4M 0s
  6500K .......... .......... .......... .......... .......... 59% 61.6M 0s
  6550K .......... .......... .......... .......... .......... 59% 49.1M 0s
  6600K .......... .......... .......... .......... .......... 59% 24.2M 0s
  6650K .......... .......... .......... .......... .......... 60% 32.5M 0s
  6700K .......... .......... .......... .......... .......... 60% 38.1M 0s
  6750K .......... .......... .......... .......... .......... 61% 58.6M 0s
  6800K .......... .......... .......... .......... .......... 61% 28.7M 0s
  6850K .......... .......... .......... .......... .......... 62% 22.4M 0s
  6900K .......... .......... .......... .......... .......... 62% 57.5M 0s
  6950K .......... .......... .......... .......... .......... 63% 60.6M 0s
  7000K .......... .......... .......... .......... .......... 63% 21.9M 0s
  7050K .......... .......... .......... .......... .......... 63% 50.9M 0s
  7100K .......... .......... .......... .......... .......... 64% 49.3M 0s
  7150K .......... .......... .......... .......... .......... 64% 41.0M 0s
  7200K .......... .......... .......... .......... .......... 65% 30.8M 0s
  7250K .......... .......... .......... .......... .......... 65% 40.7M 0s
  7300K .......... .......... .......... .......... .......... 66% 42.3M 0s
  7350K .......... .......... .......... .......... .......... 66% 38.6M 0s
  7400K .......... .......... .......... .......... .......... 67% 37.5M 0s
  7450K .......... .......... .......... .......... .......... 67% 29.7M 0s
  7500K .......... .......... .......... .......... .......... 68% 34.5M 0s
  7550K .......... .......... .......... .......... .......... 68% 56.0M 0s
  7600K .......... .......... .......... .......... .......... 68% 29.1M 0s
  7650K .......... .......... .......... .......... .......... 69% 63.9M 0s
  7700K .......... .......... .......... .......... .......... 69% 49.7M 0s
  7750K .......... .......... .......... .......... .......... 70% 28.5M 0s
  7800K .......... .......... .......... .......... .......... 70% 60.4M 0s
  7850K .......... .......... .......... .......... .......... 71% 24.4M 0s
  7900K .......... .......... .......... .......... .......... 71% 72.5M 0s
  7950K .......... .......... .......... .......... .......... 72% 56.3M 0s
  8000K .......... .......... .......... .......... .......... 72% 32.1M 0s
  8050K .......... .......... .......... .......... .......... 72% 29.2M 0s
  8100K .......... .......... .......... .......... .......... 73% 54.6M 0s
  8150K .......... .......... .......... .......... .......... 73%  100M 0s
  8200K .......... .......... .......... .......... .......... 74% 26.8M 0s
  8250K .......... .......... .......... .......... .......... 74% 56.2M 0s
  8300K .......... .......... .......... .......... .......... 75% 50.9M 0s
  8350K .......... .......... .......... .......... .......... 75% 28.6M 0s
  8400K .......... .......... .......... .......... .......... 76% 73.2M 0s
  8450K .......... .......... .......... .......... .......... 76% 22.4M 0s
  8500K .......... .......... .......... .......... .......... 77% 45.1M 0s
  8550K .......... .......... .......... .......... .......... 77% 72.7M 0s
  8600K .......... .......... .......... .......... .......... 77% 62.0M 0s
  8650K .......... .......... .......... .......... .......... 78% 37.0M 0s
  8700K .......... .......... .......... .......... .......... 78% 50.5M 0s
  8750K .......... .......... .......... .......... .......... 79% 45.0M 0s
  8800K .......... .......... .......... .......... .......... 79% 31.4M 0s
  8850K .......... .......... .......... .......... .......... 80% 66.5M 0s
  8900K .......... .......... .......... .......... .......... 80% 81.9M 0s
  8950K .......... .......... .......... .......... .......... 81% 30.8M 0s
  9000K .......... .......... .......... .......... .......... 81% 38.3M 0s
  9050K .......... .......... .......... .......... .......... 82% 45.4M 0s
  9100K .......... .......... .......... .......... .......... 82% 67.8M 0s
  9150K .......... .......... .......... .......... .......... 82% 64.5M 0s
  9200K .......... .......... .......... .......... .......... 83% 33.3M 0s
  9250K .......... .......... .......... .......... .......... 83% 43.8M 0s
  9300K .......... .......... .......... .......... .......... 84% 87.3M 0s
  9350K .......... .......... .......... .......... .......... 84% 42.8M 0s
  9400K .......... .......... .......... .......... .......... 85% 38.4M 0s
  9450K .......... .......... .......... .......... .......... 85% 33.9M 0s
  9500K .......... .......... .......... .......... .......... 86% 32.0M 0s
  9550K .......... .......... .......... .......... .......... 86% 61.3M 0s
  9600K .......... .......... .......... .......... .......... 86%  113M 0s
  9650K .......... .......... .......... .......... .......... 87% 49.9M 0s
  9700K .......... .......... .......... .......... .......... 87% 33.1M 0s
  9750K .......... .......... .......... .......... .......... 88% 50.6M 0s
  9800K .......... .......... .......... .......... .......... 88% 54.6M 0s
  9850K .......... .......... .......... .......... .......... 89% 56.8M 0s
  9900K .......... .......... .......... .......... .......... 89% 44.6M 0s
  9950K .......... .......... .......... .......... .......... 90% 34.6M 0s
 10000K .......... .......... .......... .......... .......... 90% 88.5M 0s
 10050K .......... .......... .......... .......... .......... 91% 28.9M 0s
 10100K .......... .......... .......... .......... .......... 91% 51.6M 0s
 10150K .......... .......... .......... .......... .......... 91% 75.3M 0s
 10200K .......... .......... .......... .......... .......... 92% 63.4M 0s
 10250K .......... .......... .......... .......... .......... 92% 36.9M 0s
 10300K .......... .......... .......... .......... .......... 93% 42.5M 0s
 10350K .......... .......... .......... .......... .......... 93% 75.5M 0s
 10400K .......... .......... .......... .......... .......... 94%  110M 0s
 10450K .......... .......... .......... .......... .......... 94% 44.7M 0s
 10500K .......... .......... .......... .......... .......... 95% 30.5M 0s
 10550K .......... .......... .......... .......... .......... 95%  111M 0s
 10600K .......... .......... .......... .......... .......... 95% 29.1M 0s
 10650K .......... .......... .......... .......... .......... 96% 76.3M 0s
 10700K .......... .......... .......... .......... .......... 96% 60.3M 0s
 10750K .......... .......... .......... .......... .......... 97% 84.3M 0s
 10800K .......... .......... .......... .......... .......... 97% 63.1M 0s
 10850K .......... .......... .......... .......... .......... 98% 38.2M 0s
 10900K .......... .......... .......... .......... .......... 98% 78.9M 0s
 10950K .......... .......... .......... .......... .......... 99% 34.8M 0s
 11000K .......... .......... .......... .......... .......... 99% 99.7M 0s
 11050K .......... .......... .......... .......... ......    100% 50.1M=0.5s

Last-modified header missing -- time-stamps turned off.
2018-03-09 09:07:10 (22.6 MB/s) - ‘jar/createMysqlHPODbVersion.jar’ saved [11363315/11363315]

# Employ wget to retrieve data from NCBI/OMIM, Orphanet, HPO stuff. 
# File are listed in external_data.txt. We also ignore lines starting with "#"
cd data ; cat ../external_data.txt | sed "/^#.*$/d" | wget --retry-connrefused -N -i -
--2018-03-09 09:07:10--  ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/mim2gene_medgen
Resolving proxy.charite.de (proxy.charite.de)... 141.42.1.215
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 757547 (740K) [text/plain]
Saving to: ‘mim2gene_medgen’

     0K .......... .......... .......... .......... ..........  6% 10.2M 0s
    50K .......... .......... .......... .......... .......... 13% 31.4M 0s
   100K .......... .......... .......... .......... .......... 20% 29.6M 0s
   150K .......... .......... .......... .......... .......... 27% 40.0M 0s
   200K .......... .......... .......... .......... .......... 33% 47.2M 0s
   250K .......... .......... .......... .......... .......... 40% 32.3M 0s
   300K .......... .......... .......... .......... .......... 47% 56.4M 0s
   350K .......... .......... .......... .......... .......... 54% 48.0M 0s
   400K .......... .......... .......... .......... .......... 60% 48.5M 0s
   450K .......... .......... .......... .......... .......... 67% 52.4M 0s
   500K .......... .......... .......... .......... .......... 74% 50.6M 0s
   550K .......... .......... .......... .......... .......... 81% 19.0M 0s
   600K .......... .......... .......... .......... .......... 87% 52.5M 0s
   650K .......... .......... .......... .......... .......... 94% 70.5M 0s
   700K .......... .......... .......... .........            100% 52.1M=0.02s

2018-03-09 09:07:14 (33.6 MB/s) - ‘mim2gene_medgen’ saved [757547/757547]

--2018-03-09 09:07:14--  ftp://ftp.ncbi.nih.gov/gene/DATA/GENE_INFO/Mammalia/Homo_sapiens.gene_info.gz
Reusing existing connection to proxy.charite.de:8080.
Proxy request sent, awaiting response... 200 OK
Length: 2885296 (2.8M) [text/plain]
Saving to: ‘Homo_sapiens.gene_info.gz’

     0K .......... .......... .......... .......... ..........  1% 21.9M 0s
    50K .......... .......... .......... .......... ..........  3% 48.8M 0s
   100K .......... .......... .......... .......... ..........  5%  121K 7s
   150K .......... .......... .......... .......... ..........  7% 41.0M 5s
   200K .......... .......... .......... .......... ..........  8% 51.8M 4s
   250K .......... .......... .......... .......... .......... 10% 52.9M 4s
   300K .......... .......... .......... .......... .......... 12% 15.4M 3s
   350K .......... .......... .......... .......... .......... 14% 30.3M 3s
   400K .......... .......... .......... .......... .......... 15% 43.3M 2s
   450K .......... .......... .......... .......... .......... 17% 54.0M 2s
   500K .......... .......... .......... .......... .......... 19% 77.1M 2s
   550K .......... .......... .......... .......... .......... 21% 61.0M 2s
   600K .......... .......... .......... .......... .......... 23% 69.7M 1s
   650K .......... .......... .......... .......... .......... 24% 61.3M 1s
   700K .......... .......... .......... .......... .......... 26% 90.6M 1s
   750K .......... .......... .......... .......... .......... 28% 58.6M 1s
   800K .......... .......... .......... .......... .......... 30% 81.0M 1s
   850K .......... .......... .......... .......... .......... 31% 64.1M 1s
   900K .......... .......... .......... .......... .......... 33% 50.9M 1s
   950K .......... .......... .......... .......... .......... 35% 54.9M 1s
  1000K .......... .......... .......... .......... .......... 37% 93.6M 1s
  1050K .......... .......... .......... .......... .......... 39% 68.8M 1s
  1100K .......... .......... .......... .......... .......... 40%  108M 1s
  1150K .......... .......... .......... .......... .......... 42% 65.1M 1s
  1200K .......... .......... .......... .......... .......... 44% 77.0M 1s
  1250K .......... .......... .......... .......... .......... 46%  107M 1s
  1300K .......... .......... .......... .......... .......... 47% 89.5M 0s
  1350K .......... .......... .......... .......... .......... 49% 95.9M 0s
  1400K .......... .......... .......... .......... .......... 51% 89.6M 0s
  1450K .......... .......... .......... .......... .......... 53%  106M 0s
  1500K .......... .......... .......... .......... .......... 55%  100M 0s
  1550K .......... .......... .......... .......... .......... 56% 79.5M 0s
  1600K .......... .......... .......... .......... .......... 58%  105M 0s
  1650K .......... .......... .......... .......... .......... 60% 88.5M 0s
  1700K .......... .......... .......... .......... .......... 62% 97.0M 0s
  1750K .......... .......... .......... .......... .......... 63%  112M 0s
  1800K .......... .......... .......... .......... .......... 65% 97.1M 0s
  1850K .......... .......... .......... .......... .......... 67% 96.6M 0s
  1900K .......... .......... .......... .......... .......... 69% 99.6M 0s
  1950K .......... .......... .......... .......... .......... 70% 98.3M 0s
  2000K .......... .......... .......... .......... .......... 72%  113M 0s
  2050K .......... .......... .......... .......... .......... 74% 46.1M 0s
  2100K .......... .......... .......... .......... .......... 76%  113M 0s
  2150K .......... .......... .......... .......... .......... 78% 90.8M 0s
  2200K .......... .......... .......... .......... .......... 79%  104M 0s
  2250K .......... .......... .......... .......... .......... 81%  113M 0s
  2300K .......... .......... .......... .......... .......... 83%  113M 0s
  2350K .......... .......... .......... .......... .......... 85%  106M 0s
  2400K .......... .......... .......... .......... .......... 86%  101M 0s
  2450K .......... .......... .......... .......... .......... 88%  110M 0s
  2500K .......... .......... .......... .......... .......... 90% 96.4M 0s
  2550K .......... .......... .......... .......... .......... 92% 98.6M 0s
  2600K .......... .......... .......... .......... .......... 94%  108M 0s
  2650K .......... .......... .......... .......... .......... 95%  114M 0s
  2700K .......... .......... .......... .......... .......... 97% 96.1M 0s
  2750K .......... .......... .......... .......... .......... 99%  115M 0s
  2800K .......... .......                                    100%  106M=0.5s

2018-03-09 09:07:20 (6.08 MB/s) - ‘Homo_sapiens.gene_info.gz’ saved [2885296/2885296]

--2018-03-09 09:07:20--  http://www.orphadata.org/data/xml/en_product6.xml
Reusing existing connection to proxy.charite.de:8080.
Proxy request sent, awaiting response... 200 OK
Length: 18780573 (18M) [text/xml]
Saving to: ‘en_product6.xml’

     0K .......... .......... .......... .......... ..........  0%  573K 32s
    50K .......... .......... .......... .......... ..........  0% 1.65M 21s
   100K .......... .......... .......... .......... ..........  0%  857K 21s
   150K .......... .......... .......... .......... ..........  1% 1.67M 19s
   200K .......... .......... .......... .......... ..........  1% 1.57M 17s
   250K .......... .......... .......... .......... ..........  1% 25.9M 14s
   300K .......... .......... .......... .......... ..........  1% 1.85M 14s
   350K .......... .......... .......... .......... ..........  2% 1.70M 13s
   400K .......... .......... .......... .......... ..........  2% 37.6M 12s
   450K .......... .......... .......... .......... ..........  2% 1.73M 11s
   500K .......... .......... .......... .......... ..........  2% 48.4M 10s
   550K .......... .......... .......... .......... ..........  3% 1.73M 10s
   600K .......... .......... .......... .......... ..........  3% 65.8M 10s
   650K .......... .......... .......... .......... ..........  3% 1.73M 10s
   700K .......... .......... .......... .......... ..........  4%  100M 9s
   750K .......... .......... .......... .......... ..........  4% 81.6M 8s
   800K .......... .......... .......... .......... ..........  4% 1.62M 8s
   850K .......... .......... .......... .......... ..........  4% 99.9M 8s
   900K .......... .......... .......... .......... ..........  5%  108M 8s
   950K .......... .......... .......... .......... ..........  5% 1.78M 8s
  1000K .......... .......... .......... .......... ..........  5% 64.5M 7s
  1050K .......... .......... .......... .......... ..........  5% 61.5M 7s
  1100K .......... .......... .......... .......... ..........  6% 40.1M 7s
  1150K .......... .......... .......... .......... ..........  6% 1.89M 7s
  1200K .......... .......... .......... .......... ..........  6% 31.0M 6s
  1250K .......... .......... .......... .......... ..........  7% 71.2M 6s
  1300K .......... .......... .......... .......... ..........  7% 74.1M 6s
  1350K .......... .......... .......... .......... ..........  7% 1.81M 6s
  1400K .......... .......... .......... .......... ..........  7% 21.9M 6s
  1450K .......... .......... .......... .......... ..........  8% 65.1M 6s
  1500K .......... .......... .......... .......... ..........  8%  102M 5s
  1550K .......... .......... .......... .......... ..........  8%  116M 5s
  1600K .......... .......... .......... .......... ..........  8% 1.96M 5s
  1650K .......... .......... .......... .......... ..........  9% 33.3M 5s
  1700K .......... .......... .......... .......... ..........  9% 51.5M 5s
  1750K .......... .......... .......... .......... ..........  9%  113M 5s
  1800K .......... .......... .......... .......... .......... 10% 56.7M 5s
  1850K .......... .......... .......... .......... .......... 10% 1.93M 5s
  1900K .......... .......... .......... .......... .......... 10% 45.1M 5s
  1950K .......... .......... .......... .......... .......... 10% 52.4M 5s
  2000K .......... .......... .......... .......... .......... 11% 31.7M 4s
  2050K .......... .......... .......... .......... .......... 11% 86.3M 4s
  2100K .......... .......... .......... .......... .......... 11% 97.7M 4s
  2150K .......... .......... .......... .......... .......... 11% 2.01M 4s
  2200K .......... .......... .......... .......... .......... 12% 83.0M 4s
  2250K .......... .......... .......... .......... .......... 12% 34.2M 4s
  2300K .......... .......... .......... .......... .......... 12%  118M 4s
  2350K .......... .......... .......... .......... .......... 13% 41.7M 4s
  2400K .......... .......... .......... .......... .......... 13% 95.0M 4s
  2450K .......... .......... .......... .......... .......... 13%  104M 4s
  2500K .......... .......... .......... .......... .......... 13% 1.96M 4s
  2550K .......... .......... .......... .......... .......... 14% 67.6M 4s
  2600K .......... .......... .......... .......... .......... 14% 51.5M 4s
  2650K .......... .......... .......... .......... .......... 14%  108M 4s
  2700K .......... .......... .......... .......... .......... 14%  106M 3s
  2750K .......... .......... .......... .......... .......... 15% 74.2M 3s
  2800K .......... .......... .......... .......... .......... 15% 51.4M 3s
  2850K .......... .......... .......... .......... .......... 15% 94.7M 3s
  2900K .......... .......... .......... .......... .......... 16% 96.9M 3s
  2950K .......... .......... .......... .......... .......... 16% 1.98M 3s
  3000K .......... .......... .......... .......... .......... 16%  102M 3s
  3050K .......... .......... .......... .......... .......... 16% 41.6M 3s
  3100K .......... .......... .......... .......... .......... 17% 86.5M 3s
  3150K .......... .......... .......... .......... .......... 17%  108M 3s
  3200K .......... .......... .......... .......... .......... 17%  102M 3s
  3250K .......... .......... .......... .......... .......... 17%  113M 3s
  3300K .......... .......... .......... .......... .......... 18%  108M 3s
  3350K .......... .......... .......... .......... .......... 18%  115M 3s
  3400K .......... .......... .......... .......... .......... 18% 2.01M 3s
  3450K .......... .......... .......... .......... .......... 19% 84.0M 3s
  3500K .......... .......... .......... .......... .......... 19% 58.1M 3s
  3550K .......... .......... .......... .......... .......... 19% 83.1M 3s
  3600K .......... .......... .......... .......... .......... 19%  109M 3s
  3650K .......... .......... .......... .......... .......... 20% 82.5M 3s
  3700K .......... .......... .......... .......... .......... 20% 27.2M 3s
  3750K .......... .......... .......... .......... .......... 20% 71.5M 3s
  3800K .......... .......... .......... .......... .......... 20% 18.8M 3s
  3850K .......... .......... .......... .......... .......... 21%  110M 3s
  3900K .......... .......... .......... .......... .......... 21% 2.42M 3s
  3950K .......... .......... .......... .......... .......... 21% 46.4M 3s
  4000K .......... .......... .......... .......... .......... 22% 86.5M 2s
  4050K .......... .......... .......... .......... .......... 22%  120M 2s
  4100K .......... .......... .......... .......... .......... 22%  108M 2s
  4150K .......... .......... .......... .......... .......... 22% 83.1M 2s
  4200K .......... .......... .......... .......... .......... 23%  118M 2s
  4250K .......... .......... .......... .......... .......... 23% 80.5M 2s
  4300K .......... .......... .......... .......... .......... 23% 59.1M 2s
  4350K .......... .......... .......... .......... .......... 23% 60.3M 2s
  4400K .......... .......... .......... .......... .......... 24% 23.3M 2s
  4450K .......... .......... .......... .......... .......... 24% 81.0M 2s
  4500K .......... .......... .......... .......... .......... 24% 2.32M 2s
  4550K .......... .......... .......... .......... .......... 25% 77.2M 2s
  4600K .......... .......... .......... .......... .......... 25%  102M 2s
  4650K .......... .......... .......... .......... .......... 25%  110M 2s
  4700K .......... .......... .......... .......... .......... 25% 84.2M 2s
  4750K .......... .......... .......... .......... .......... 26%  113M 2s
  4800K .......... .......... .......... .......... .......... 26%  101M 2s
  4850K .......... .......... .......... .......... .......... 26%  110M 2s
  4900K .......... .......... .......... .......... .......... 26%  113M 2s
  4950K .......... .......... .......... .......... .......... 27% 78.0M 2s
  5000K .......... .......... .......... .......... .......... 27% 87.2M 2s
  5050K .......... .......... .......... .......... .......... 27%  101M 2s
  5100K .......... .......... .......... .......... .......... 28% 28.1M 2s
  5150K .......... .......... .......... .......... .......... 28% 2.26M 2s
  5200K .......... .......... .......... .......... .......... 28% 30.7M 2s
  5250K .......... .......... .......... .......... .......... 28% 75.4M 2s
  5300K .......... .......... .......... .......... .......... 29%  110M 2s
  5350K .......... .......... .......... .......... .......... 29%  102M 2s
  5400K .......... .......... .......... .......... .......... 29% 82.6M 2s
  5450K .......... .......... .......... .......... .......... 29%  108M 2s
  5500K .......... .......... .......... .......... .......... 30%  117M 2s
  5550K .......... .......... .......... .......... .......... 30%  116M 2s
  5600K .......... .......... .......... .......... .......... 30%  100M 2s
  5650K .......... .......... .......... .......... .......... 31%  112M 2s
  5700K .......... .......... .......... .......... .......... 31%  101M 2s
  5750K .......... .......... .......... .......... .......... 31%  124M 2s
  5800K .......... .......... .......... .......... .......... 31%  105M 2s
  5850K .......... .......... .......... .......... .......... 32% 94.1M 2s
  5900K .......... .......... .......... .......... .......... 32% 41.7M 2s
  5950K .......... .......... .......... .......... .......... 32% 2.34M 2s
  6000K .......... .......... .......... .......... .......... 32% 37.0M 2s
  6050K .......... .......... .......... .......... .......... 33% 97.4M 2s
  6100K .......... .......... .......... .......... .......... 33% 90.9M 2s
  6150K .......... .......... .......... .......... .......... 33%  110M 2s
  6200K .......... .......... .......... .......... .......... 34%  114M 2s
  6250K .......... .......... .......... .......... .......... 34%  106M 2s
  6300K .......... .......... .......... .......... .......... 34%  113M 2s
  6350K .......... .......... .......... .......... .......... 34%  103M 1s
  6400K .......... .......... .......... .......... .......... 35%  117M 1s
  6450K .......... .......... .......... .......... .......... 35%  106M 1s
  6500K .......... .......... .......... .......... .......... 35% 80.3M 1s
  6550K .......... .......... .......... .......... .......... 35%  114M 1s
  6600K .......... .......... .......... .......... .......... 36% 98.1M 1s
  6650K .......... .......... .......... .......... .......... 36% 93.1M 1s
  6700K .......... .......... .......... .......... .......... 36%  103M 1s
  6750K .......... .......... .......... .......... .......... 37%  114M 1s
  6800K .......... .......... .......... .......... .......... 37% 2.39M 1s
  6850K .......... .......... .......... .......... .......... 37% 82.5M 1s
  6900K .......... .......... .......... .......... .......... 37% 50.0M 1s
  6950K .......... .......... .......... .......... .......... 38%  107M 1s
  7000K .......... .......... .......... .......... .......... 38%  106M 1s
  7050K .......... .......... .......... .......... .......... 38%  103M 1s
  7100K .......... .......... .......... .......... .......... 38% 69.2M 1s
  7150K .......... .......... .......... .......... .......... 39%  120M 1s
  7200K .......... .......... .......... .......... .......... 39% 82.9M 1s
  7250K .......... .......... .......... .......... .......... 39% 94.8M 1s
  7300K .......... .......... .......... .......... .......... 40%  120M 1s
  7350K .......... .......... .......... .......... .......... 40%  109M 1s
  7400K .......... .......... .......... .......... .......... 40%  106M 1s
  7450K .......... .......... .......... .......... .......... 40%  112M 1s
  7500K .......... .......... .......... .......... .......... 41% 69.8M 1s
  7550K .......... .......... .......... .......... .......... 41%  106M 1s
  7600K .......... .......... .......... .......... .......... 41%  119M 1s
  7650K .......... .......... .......... .......... .......... 41%  102M 1s
  7700K .......... .......... .......... .......... .......... 42%  119M 1s
  7750K .......... .......... .......... .......... .......... 42% 2.48M 1s
  7800K .......... .......... .......... .......... .......... 42% 74.0M 1s
  7850K .......... .......... .......... .......... .......... 43% 45.5M 1s
  7900K .......... .......... .......... .......... .......... 43% 59.3M 1s
  7950K .......... .......... .......... .......... .......... 43%  104M 1s
  8000K .......... .......... .......... .......... .......... 43%  118M 1s
  8050K .......... .......... .......... .......... .......... 44%  111M 1s
  8100K .......... .......... .......... .......... .......... 44%  101M 1s
  8150K .......... .......... .......... .......... .......... 44% 88.9M 1s
  8200K .......... .......... .......... .......... .......... 44%  102M 1s
  8250K .......... .......... .......... .......... .......... 45%  121M 1s
  8300K .......... .......... .......... .......... .......... 45%  106M 1s
  8350K .......... .......... .......... .......... .......... 45% 99.7M 1s
  8400K .......... .......... .......... .......... .......... 46%  117M 1s
  8450K .......... .......... .......... .......... .......... 46%  102M 1s
  8500K .......... .......... .......... .......... .......... 46%  105M 1s
  8550K .......... .......... .......... .......... .......... 46%  113M 1s
  8600K .......... .......... .......... .......... .......... 47%  113M 1s
  8650K .......... .......... .......... .......... .......... 47%  116M 1s
  8700K .......... .......... .......... .......... .......... 47%  113M 1s
  8750K .......... .......... .......... .......... .......... 47%  111M 1s
  8800K .......... .......... .......... .......... .......... 48% 65.2M 1s
  8850K .......... .......... .......... .......... .......... 48%  106M 1s
  8900K .......... .......... .......... .......... .......... 48% 2.67M 1s
  8950K .......... .......... .......... .......... .......... 49% 55.1M 1s
  9000K .......... .......... .......... .......... .......... 49% 83.4M 1s
  9050K .......... .......... .......... .......... .......... 49% 75.4M 1s
  9100K .......... .......... .......... .......... .......... 49%  126M 1s
  9150K .......... .......... .......... .......... .......... 50% 76.2M 1s
  9200K .......... .......... .......... .......... .......... 50% 12.2M 1s
  9250K .......... .......... .......... .......... .......... 50% 92.3M 1s
  9300K .......... .......... .......... .......... .......... 50%  101M 1s
  9350K .......... .......... .......... .......... .......... 51%  121M 1s
  9400K .......... .......... .......... .......... .......... 51% 97.7M 1s
  9450K .......... .......... .......... .......... .......... 51% 59.8M 1s
  9500K .......... .......... .......... .......... .......... 52%  106M 1s
  9550K .......... .......... .......... .......... .......... 52%  107M 1s
  9600K .......... .......... .......... .......... .......... 52%  119M 1s
  9650K .......... .......... .......... .......... .......... 52% 97.5M 1s
  9700K .......... .......... .......... .......... .......... 53%  115M 1s
  9750K .......... .......... .......... .......... .......... 53%  114M 1s
  9800K .......... .......... .......... .......... .......... 53%  113M 1s
  9850K .......... .......... .......... .......... .......... 53% 91.5M 1s
  9900K .......... .......... .......... .......... .......... 54%  113M 1s
  9950K .......... .......... .......... .......... .......... 54% 99.3M 1s
 10000K .......... .......... .......... .......... .......... 54%  113M 1s
 10050K .......... .......... .......... .......... .......... 55%  113M 1s
 10100K .......... .......... .......... .......... .......... 55%  113M 1s
 10150K .......... .......... .......... .......... .......... 55% 3.70M 1s
 10200K .......... .......... .......... .......... .......... 55% 76.8M 1s
 10250K .......... .......... .......... .......... .......... 56% 77.9M 1s
 10300K .......... .......... .......... .......... .......... 56% 83.7M 1s
 10350K .......... .......... .......... .......... .......... 56% 64.6M 1s
 10400K .......... .......... .......... .......... .......... 56% 94.5M 1s
 10450K .......... .......... .......... .......... .......... 57% 97.3M 1s
 10500K .......... .......... .......... .......... .......... 57%  105M 1s
 10550K .......... .......... .......... .......... .......... 57% 85.4M 1s
 10600K .......... .......... .......... .......... .......... 58%  101M 1s
 10650K .......... .......... .......... .......... .......... 58% 31.6M 1s
 10700K .......... .......... .......... .......... .......... 58% 92.3M 1s
 10750K .......... .......... .......... .......... .......... 58%  104M 1s
 10800K .......... .......... .......... .......... .......... 59%  109M 1s
 10850K .......... .......... .......... .......... .......... 59%  107M 1s
 10900K .......... .......... .......... .......... .......... 59% 96.6M 1s
 10950K .......... .......... .......... .......... .......... 59% 75.5M 1s
 11000K .......... .......... .......... .......... .......... 60% 86.7M 1s
 11050K .......... .......... .......... .......... .......... 60% 88.9M 1s
 11100K .......... .......... .......... .......... .......... 60%  113M 1s
 11150K .......... .......... .......... .......... .......... 61% 45.7M 1s
 11200K .......... .......... .......... .......... .......... 61%  106M 1s
 11250K .......... .......... .......... .......... .......... 61%  120M 1s
 11300K .......... .......... .......... .......... .......... 61% 98.7M 1s
 11350K .......... .......... .......... .......... .......... 62%  114M 1s
 11400K .......... .......... .......... .......... .......... 62%  113M 1s
 11450K .......... .......... .......... .......... .......... 62%  104M 1s
 11500K .......... .......... .......... .......... .......... 62%  107M 1s
 11550K .......... .......... .......... .......... .......... 63% 3.44M 1s
 11600K .......... .......... .......... .......... .......... 63% 86.4M 1s
 11650K .......... .......... .......... .......... .......... 63%  117M 1s
 11700K .......... .......... .......... .......... .......... 64% 89.2M 1s
 11750K .......... .......... .......... .......... .......... 64%  107M 1s
 11800K .......... .......... .......... .......... .......... 64%  106M 1s
 11850K .......... .......... .......... .......... .......... 64%  108M 1s
 11900K .......... .......... .......... .......... .......... 65%  114M 1s
 11950K .......... .......... .......... .......... .......... 65% 97.5M 0s
 12000K .......... .......... .......... .......... .......... 65%  117M 0s
 12050K .......... .......... .......... .......... .......... 65%  101M 0s
 12100K .......... .......... .......... .......... .......... 66%  110M 0s
 12150K .......... .......... .......... .......... .......... 66% 31.5M 0s
 12200K .......... .......... .......... .......... .......... 66% 98.0M 0s
 12250K .......... .......... .......... .......... .......... 67%  112M 0s
 12300K .......... .......... .......... .......... .......... 67%  111M 0s
 12350K .......... .......... .......... .......... .......... 67% 97.3M 0s
 12400K .......... .......... .......... .......... .......... 67%  108M 0s
 12450K .......... .......... .......... .......... .......... 68%  121M 0s
 12500K .......... .......... .......... .......... .......... 68%  104M 0s
 12550K .......... .......... .......... .......... .......... 68%  107M 0s
 12600K .......... .......... .......... .......... .......... 68%  112M 0s
 12650K .......... .......... .......... .......... .......... 69% 83.6M 0s
 12700K .......... .......... .......... .......... .......... 69% 96.6M 0s
 12750K .......... .......... .......... .......... .......... 69% 83.9M 0s
 12800K .......... .......... .......... .......... .......... 70%  122M 0s
 12850K .......... .......... .......... .......... .......... 70% 84.5M 0s
 12900K .......... .......... .......... .......... .......... 70% 96.0M 0s
 12950K .......... .......... .......... .......... .......... 70%  112M 0s
 13000K .......... .......... .......... .......... .......... 71%  104M 0s
 13050K .......... .......... .......... .......... .......... 71%  120M 0s
 13100K .......... .......... .......... .......... .......... 71%  102M 0s
 13150K .......... .......... .......... .......... .......... 71%  108M 0s
 13200K .......... .......... .......... .......... .......... 72% 3.80M 0s
 13250K .......... .......... .......... .......... .......... 72% 52.1M 0s
 13300K .......... .......... .......... .......... .......... 72% 77.6M 0s
 13350K .......... .......... .......... .......... .......... 73%  119M 0s
 13400K .......... .......... .......... .......... .......... 73%  100M 0s
 13450K .......... .......... .......... .......... .......... 73%  120M 0s
 13500K .......... .......... .......... .......... .......... 73% 99.8M 0s
 13550K .......... .......... .......... .......... .......... 74%  122M 0s
 13600K .......... .......... .......... .......... .......... 74%  104M 0s
 13650K .......... .......... .......... .......... .......... 74% 64.2M 0s
 13700K .......... .......... .......... .......... .......... 74% 68.5M 0s
 13750K .......... .......... .......... .......... .......... 75%  106M 0s
 13800K .......... .......... .......... .......... .......... 75%  117M 0s
 13850K .......... .......... .......... .......... .......... 75%  104M 0s
 13900K .......... .......... .......... .......... .......... 76%  103M 0s
 13950K .......... .......... .......... .......... .......... 76%  122M 0s
 14000K .......... .......... .......... .......... .......... 76%  105M 0s
 14050K .......... .......... .......... .......... .......... 76%  107M 0s
 14100K .......... .......... .......... .......... .......... 77%  106M 0s
 14150K .......... .......... .......... .......... .......... 77%  120M 0s
 14200K .......... .......... .......... .......... .......... 77%  106M 0s
 14250K .......... .......... .......... .......... .......... 77%  119M 0s
 14300K .......... .......... .......... .......... .......... 78% 96.1M 0s
 14350K .......... .......... .......... .......... .......... 78%  120M 0s
 14400K .......... .......... .......... .......... .......... 78%  107M 0s
 14450K .......... .......... .......... .......... .......... 79% 85.3M 0s
 14500K .......... .......... .......... .......... .......... 79% 64.6M 0s
 14550K .......... .......... .......... .......... .......... 79%  117M 0s
 14600K .......... .......... .......... .......... .......... 79%  111M 0s
 14650K .......... .......... .......... .......... .......... 80% 42.9M 0s
 14700K .......... .......... .......... .......... .......... 80% 78.4M 0s
 14750K .......... .......... .......... .......... .......... 80%  109M 0s
 14800K .......... .......... .......... .......... .......... 80%  116M 0s
 14850K .......... .......... .......... .......... .......... 81%  103M 0s
 14900K .......... .......... .......... .......... .......... 81% 97.3M 0s
 14950K .......... .......... .......... .......... .......... 81%  112M 0s
 15000K .......... .......... .......... .......... .......... 82%  115M 0s
 15050K .......... .......... .......... .......... .......... 82%  104M 0s
 15100K .......... .......... .......... .......... .......... 82% 4.51M 0s
 15150K .......... .......... .......... .......... .......... 82% 90.1M 0s
 15200K .......... .......... .......... .......... .......... 83%  116M 0s
 15250K .......... .......... .......... .......... .......... 83%  114M 0s
 15300K .......... .......... .......... .......... .......... 83% 98.4M 0s
 15350K .......... .......... .......... .......... .......... 83%  103M 0s
 15400K .......... .......... .......... .......... .......... 84%  107M 0s
 15450K .......... .......... .......... .......... .......... 84%  116M 0s
 15500K .......... .......... .......... .......... .......... 84%  112M 0s
 15550K .......... .......... .......... .......... .......... 85%  104M 0s
 15600K .......... .......... .......... .......... .......... 85%  115M 0s
 15650K .......... .......... .......... .......... .......... 85%  103M 0s
 15700K .......... .......... .......... .......... .......... 85% 69.6M 0s
 15750K .......... .......... .......... .......... .......... 86%  114M 0s
 15800K .......... .......... .......... .......... .......... 86%  102M 0s
 15850K .......... .......... .......... .......... .......... 86%  101M 0s
 15900K .......... .......... .......... .......... .......... 86% 79.7M 0s
 15950K .......... .......... .......... .......... .......... 87% 70.4M 0s
 16000K .......... .......... .......... .......... .......... 87% 86.1M 0s
 16050K .......... .......... .......... .......... .......... 87%  115M 0s
 16100K .......... .......... .......... .......... .......... 88%  104M 0s
 16150K .......... .......... .......... .......... .......... 88%  114M 0s
 16200K .......... .......... .......... .......... .......... 88%  114M 0s
 16250K .......... .......... .......... .......... .......... 88%  107M 0s
 16300K .......... .......... .......... .......... .......... 89%  114M 0s
 16350K .......... .......... .......... .......... .......... 89%  102M 0s
 16400K .......... .......... .......... .......... .......... 89%  113M 0s
 16450K .......... .......... .......... .......... .......... 89%  110M 0s
 16500K .......... .......... .......... .......... .......... 90% 95.0M 0s
 16550K .......... .......... .......... .......... .......... 90%  114M 0s
 16600K .......... .......... .......... .......... .......... 90%  111M 0s
 16650K .......... .......... .......... .......... .......... 91% 87.7M 0s
 16700K .......... .......... .......... .......... .......... 91%  116M 0s
 16750K .......... .......... .......... .......... .......... 91%  101M 0s
 16800K .......... .......... .......... .......... .......... 91%  103M 0s
 16850K .......... .......... .......... .......... .......... 92%  113M 0s
 16900K .......... .......... .......... .......... .......... 92%  113M 0s
 16950K .......... .......... .......... .......... .......... 92%  113M 0s
 17000K .......... .......... .......... .......... .......... 92%  113M 0s
 17050K .......... .......... .......... .......... .......... 93%  114M 0s
 17100K .......... .......... .......... .......... .......... 93%  101M 0s
 17150K .......... .......... .......... .......... .......... 93%  114M 0s
 17200K .......... .......... .......... .......... .......... 94% 5.37M 0s
 17250K .......... .......... .......... .......... .......... 94% 93.4M 0s
 17300K .......... .......... .......... .......... .......... 94% 69.4M 0s
 17350K .......... .......... .......... .......... .......... 94% 89.9M 0s
 17400K .......... .......... .......... .......... .......... 95% 42.2M 0s
 17450K .......... .......... .......... .......... .......... 95% 71.6M 0s
 17500K .......... .......... .......... .......... .......... 95% 97.0M 0s
 17550K .......... .......... .......... .......... .......... 95% 97.1M 0s
 17600K .......... .......... .......... .......... .......... 96% 98.1M 0s
 17650K .......... .......... .......... .......... .......... 96%  102M 0s
 17700K .......... .......... .......... .......... .......... 96%  112M 0s
 17750K .......... .......... .......... .......... .......... 97%  109M 0s
 17800K .......... .......... .......... .......... .......... 97%  113M 0s
 17850K .......... .......... .......... .......... .......... 97%  106M 0s
 17900K .......... .......... .......... .......... .......... 97%  114M 0s
 17950K .......... .......... .......... .......... .......... 98%  104M 0s
 18000K .......... .......... .......... .......... .......... 98%  116M 0s
 18050K .......... .......... .......... .......... .......... 98%  114M 0s
 18100K .......... .......... .......... .......... .......... 98%  113M 0s
 18150K .......... .......... .......... .......... .......... 99%  102M 0s
 18200K .......... .......... .......... .......... .......... 99%  113M 0s
 18250K .......... .......... .......... .......... .......... 99%  116M 0s
 18300K .......... .......... .......... ..........           100%  105M=1.0s

2018-03-09 09:07:21 (17.3 MB/s) - ‘en_product6.xml’ saved [18780573/18780573]

--2018-03-09 09:07:21--  http://compbio.charite.de/jenkins/job/hpo.annotations/lastSuccessfulBuild/artifact/misc/phenotype_annotation.tab
Reusing existing connection to proxy.charite.de:8080.
Proxy request sent, awaiting response... 200 OK
Length: 19109571 (18M) [application/octet-stream]
Saving to: ‘phenotype_annotation.tab’

     0K .......... .......... .......... .......... ..........  0% 48.4M 0s
    50K .......... .......... .......... .......... ..........  0%  112M 0s
   100K .......... .......... .......... .......... ..........  0% 81.6M 0s
   150K .......... .......... .......... .......... ..........  1% 89.8M 0s
   200K .......... .......... .......... .......... ..........  1% 67.9M 0s
   250K .......... .......... .......... .......... ..........  1% 80.2M 0s
   300K .......... .......... .......... .......... ..........  1% 89.5M 0s
   350K .......... .......... .......... .......... ..........  2% 91.9M 0s
   400K .......... .......... .......... .......... ..........  2% 74.3M 0s
   450K .......... .......... .......... .......... ..........  2% 76.0M 0s
   500K .......... .......... .......... .......... ..........  2% 85.4M 0s
   550K .......... .......... .......... .......... ..........  3% 84.7M 0s
   600K .......... .......... .......... .......... ..........  3% 75.5M 0s
   650K .......... .......... .......... .......... ..........  3% 51.4M 0s
   700K .......... .......... .......... .......... ..........  4% 88.1M 0s
   750K .......... .......... .......... .......... ..........  4% 78.2M 0s
   800K .......... .......... .......... .......... ..........  4%  110M 0s
   850K .......... .......... .......... .......... ..........  4%  108M 0s
   900K .......... .......... .......... .......... ..........  5% 74.1M 0s
   950K .......... .......... .......... .......... ..........  5% 77.2M 0s
  1000K .......... .......... .......... .......... ..........  5%  101M 0s
  1050K .......... .......... .......... .......... ..........  5% 56.8M 0s
  1100K .......... .......... .......... .......... ..........  6% 95.1M 0s
  1150K .......... .......... .......... .......... ..........  6% 98.1M 0s
  1200K .......... .......... .......... .......... ..........  6% 96.4M 0s
  1250K .......... .......... .......... .......... ..........  6%  100M 0s
  1300K .......... .......... .......... .......... ..........  7%  110M 0s
  1350K .......... .......... .......... .......... ..........  7%  108M 0s
  1400K .......... .......... .......... .......... ..........  7% 57.2M 0s
  1450K .......... .......... .......... .......... ..........  8%  115M 0s
  1500K .......... .......... .......... .......... ..........  8%  111M 0s
  1550K .......... .......... .......... .......... ..........  8% 98.1M 0s
  1600K .......... .......... .......... .......... ..........  8%  111M 0s
  1650K .......... .......... .......... .......... ..........  9%  109M 0s
  1700K .......... .......... .......... .......... ..........  9% 94.5M 0s
  1750K .......... .......... .......... .......... ..........  9%  101M 0s
  1800K .......... .......... .......... .......... ..........  9% 78.5M 0s
  1850K .......... .......... .......... .......... .......... 10%  114M 0s
  1900K .......... .......... .......... .......... .......... 10%  109M 0s
  1950K .......... .......... .......... .......... .......... 10%  115M 0s
  2000K .......... .......... .......... .......... .......... 10% 96.2M 0s
  2050K .......... .......... .......... .......... .......... 11%  119M 0s
  2100K .......... .......... .......... .......... .......... 11% 95.0M 0s
  2150K .......... .......... .......... .......... .......... 11%  113M 0s
  2200K .......... .......... .......... .......... .......... 12% 83.4M 0s
  2250K .......... .......... .......... .......... .......... 12% 87.3M 0s
  2300K .......... .......... .......... .......... .......... 12%  103M 0s
  2350K .......... .......... .......... .......... .......... 12%  106M 0s
  2400K .......... .......... .......... .......... .......... 13%  114M 0s
  2450K .......... .......... .......... .......... .......... 13% 99.1M 0s
  2500K .......... .......... .......... .......... .......... 13%  112M 0s
  2550K .......... .......... .......... .......... .......... 13%  109M 0s
  2600K .......... .......... .......... .......... .......... 14%  113M 0s
  2650K .......... .......... .......... .......... .......... 14%  117M 0s
  2700K .......... .......... .......... .......... .......... 14% 97.7M 0s
  2750K .......... .......... .......... .......... .......... 15%  104M 0s
  2800K .......... .......... .......... .......... .......... 15%  117M 0s
  2850K .......... .......... .......... .......... .......... 15%  102M 0s
  2900K .......... .......... .......... .......... .......... 15%  102M 0s
  2950K .......... .......... .......... .......... .......... 16%  102M 0s
  3000K .......... .......... .......... .......... .......... 16%  113M 0s
  3050K .......... .......... .......... .......... .......... 16%  121M 0s
  3100K .......... .......... .......... .......... .......... 16%  101M 0s
  3150K .......... .......... .......... .......... .......... 17%  106M 0s
  3200K .......... .......... .......... .......... .......... 17% 86.7M 0s
  3250K .......... .......... .......... .......... .......... 17% 87.6M 0s
  3300K .......... .......... .......... .......... .......... 17%  109M 0s
  3350K .......... .......... .......... .......... .......... 18% 73.2M 0s
  3400K .......... .......... .......... .......... .......... 18%  114M 0s
  3450K .......... .......... .......... .......... .......... 18%  107M 0s
  3500K .......... .......... .......... .......... .......... 19%  111M 0s
  3550K .......... .......... .......... .......... .......... 19%  105M 0s
  3600K .......... .......... .......... .......... .......... 19%  117M 0s
  3650K .......... .......... .......... .......... .......... 19%  101M 0s
  3700K .......... .......... .......... .......... .......... 20%  109M 0s
  3750K .......... .......... .......... .......... .......... 20%  107M 0s
  3800K .......... .......... .......... .......... .......... 20%  110M 0s
  3850K .......... .......... .......... .......... .......... 20%  103M 0s
  3900K .......... .......... .......... .......... .......... 21%  104M 0s
  3950K .......... .......... .......... .......... .......... 21%  112M 0s
  4000K .......... .......... .......... .......... .......... 21%  105M 0s
  4050K .......... .......... .......... .......... .......... 21%  110M 0s
  4100K .......... .......... .......... .......... .......... 22%  111M 0s
  4150K .......... .......... .......... .......... .......... 22%  104M 0s
  4200K .......... .......... .......... .......... .......... 22%  105M 0s
  4250K .......... .......... .......... .......... .......... 23% 99.2M 0s
  4300K .......... .......... .......... .......... .......... 23%  113M 0s
  4350K .......... .......... .......... .......... .......... 23%  110M 0s
  4400K .......... .......... .......... .......... .......... 23%  104M 0s
  4450K .......... .......... .......... .......... .......... 24%  107M 0s
  4500K .......... .......... .......... .......... .......... 24%  112M 0s
  4550K .......... .......... .......... .......... .......... 24% 93.7M 0s
  4600K .......... .......... .......... .......... .......... 24%  113M 0s
  4650K .......... .......... .......... .......... .......... 25%  111M 0s
  4700K .......... .......... .......... .......... .......... 25%  107M 0s
  4750K .......... .......... .......... .......... .......... 25%  111M 0s
  4800K .......... .......... .......... .......... .......... 25%  109M 0s
  4850K .......... .......... .......... .......... .......... 26%  111M 0s
  4900K .......... .......... .......... .......... .......... 26%  107M 0s
  4950K .......... .......... .......... .......... .......... 26%  104M 0s
  5000K .......... .......... .......... .......... .......... 27%  115M 0s
  5050K .......... .......... .......... .......... .......... 27%  112M 0s
  5100K .......... .......... .......... .......... .......... 27% 66.2M 0s
  5150K .......... .......... .......... .......... .......... 27%  114M 0s
  5200K .......... .......... .......... .......... .......... 28%  101M 0s
  5250K .......... .......... .......... .......... .......... 28%  107M 0s
  5300K .......... .......... .......... .......... .......... 28%  110M 0s
  5350K .......... .......... .......... .......... .......... 28% 85.4M 0s
  5400K .......... .......... .......... .......... .......... 29% 72.1M 0s
  5450K .......... .......... .......... .......... .......... 29%  113M 0s
  5500K .......... .......... .......... .......... .......... 29%  112M 0s
  5550K .......... .......... .......... .......... .......... 30%  110M 0s
  5600K .......... .......... .......... .......... .......... 30% 94.9M 0s
  5650K .......... .......... .......... .......... .......... 30%  112M 0s
  5700K .......... .......... .......... .......... .......... 30%  103M 0s
  5750K .......... .......... .......... .......... .......... 31%  114M 0s
  5800K .......... .......... .......... .......... .......... 31%  111M 0s
  5850K .......... .......... .......... .......... .......... 31%  115M 0s
  5900K .......... .......... .......... .......... .......... 31%  112M 0s
  5950K .......... .......... .......... .......... .......... 32%  113M 0s
  6000K .......... .......... .......... .......... .......... 32%  101M 0s
  6050K .......... .......... .......... .......... .......... 32%  104M 0s
  6100K .......... .......... .......... .......... .......... 32%  112M 0s
  6150K .......... .......... .......... .......... .......... 33%  102M 0s
  6200K .......... .......... .......... .......... .......... 33%  113M 0s
  6250K .......... .......... .......... .......... .......... 33%  111M 0s
  6300K .......... .......... .......... .......... .......... 34%  112M 0s
  6350K .......... .......... .......... .......... .......... 34%  104M 0s
  6400K .......... .......... .......... .......... .......... 34% 97.4M 0s
  6450K .......... .......... .......... .......... .......... 34% 98.2M 0s
  6500K .......... .......... .......... .......... .......... 35% 96.5M 0s
  6550K .......... .......... .......... .......... .......... 35%  108M 0s
  6600K .......... .......... .......... .......... .......... 35%  112M 0s
  6650K .......... .......... .......... .......... .......... 35%  101M 0s
  6700K .......... .......... .......... .......... .......... 36%  112M 0s
  6750K .......... .......... .......... .......... .......... 36%  112M 0s
  6800K .......... .......... .......... .......... .......... 36%  100M 0s
  6850K .......... .......... .......... .......... .......... 36% 64.8M 0s
  6900K .......... .......... .......... .......... .......... 37%  107M 0s
  6950K .......... .......... .......... .......... .......... 37%  101M 0s
  7000K .......... .......... .......... .......... .......... 37%  112M 0s
  7050K .......... .......... .......... .......... .......... 38%  108M 0s
  7100K .......... .......... .......... .......... .......... 38%  112M 0s
  7150K .......... .......... .......... .......... .......... 38% 98.4M 0s
  7200K .......... .......... .......... .......... .......... 38%  121M 0s
  7250K .......... .......... .......... .......... .......... 39%  111M 0s
  7300K .......... .......... .......... .......... .......... 39%  101M 0s
  7350K .......... .......... .......... .......... .......... 39%  109M 0s
  7400K .......... .......... .......... .......... .......... 39%  106M 0s
  7450K .......... .......... .......... .......... .......... 40% 98.1M 0s
  7500K .......... .......... .......... .......... .......... 40%  109M 0s
  7550K .......... .......... .......... .......... .......... 40% 98.7M 0s
  7600K .......... .......... .......... .......... .......... 40%  111M 0s
  7650K .......... .......... .......... .......... .......... 41%  112M 0s
  7700K .......... .......... .......... .......... .......... 41% 96.4M 0s
  7750K .......... .......... .......... .......... .......... 41%  118M 0s
  7800K .......... .......... .......... .......... .......... 42%  103M 0s
  7850K .......... .......... .......... .......... .......... 42%  101M 0s
  7900K .......... .......... .......... .......... .......... 42%  118M 0s
  7950K .......... .......... .......... .......... .......... 42% 57.3M 0s
  8000K .......... .......... .......... .......... .......... 43%  105M 0s
  8050K .......... .......... .......... .......... .......... 43%  118M 0s
  8100K .......... .......... .......... .......... .......... 43%  101M 0s
  8150K .......... .......... .......... .......... .......... 43%  107M 0s
  8200K .......... .......... .......... .......... .......... 44%  107M 0s
  8250K .......... .......... .......... .......... .......... 44%  111M 0s
  8300K .......... .......... .......... .......... .......... 44% 98.3M 0s
  8350K .......... .......... .......... .......... .......... 45% 60.3M 0s
  8400K .......... .......... .......... .......... .......... 45%  110M 0s
  8450K .......... .......... .......... .......... .......... 45% 62.9M 0s
  8500K .......... .......... .......... .......... .......... 45%  107M 0s
  8550K .......... .......... .......... .......... .......... 46%  118M 0s
  8600K .......... .......... .......... .......... .......... 46%  111M 0s
  8650K .......... .......... .......... .......... .......... 46%  100M 0s
  8700K .......... .......... .......... .......... .......... 46%  110M 0s
  8750K .......... .......... .......... .......... .......... 47%  111M 0s
  8800K .......... .......... .......... .......... .......... 47%  117M 0s
  8850K .......... .......... .......... .......... .......... 47% 99.1M 0s
  8900K .......... .......... .......... .......... .......... 47%  109M 0s
  8950K .......... .......... .......... .......... .......... 48%  115M 0s
  9000K .......... .......... .......... .......... .......... 48%  101M 0s
  9050K .......... .......... .......... .......... .......... 48%  116M 0s
  9100K .......... .......... .......... .......... .......... 49%  112M 0s
  9150K .......... .......... .......... .......... .......... 49%  108M 0s
  9200K .......... .......... .......... .......... .......... 49%  105M 0s
  9250K .......... .......... .......... .......... .......... 49%  107M 0s
  9300K .......... .......... .......... .......... .......... 50%  104M 0s
  9350K .......... .......... .......... .......... .......... 50%  116M 0s
  9400K .......... .......... .......... .......... .......... 50%  115M 0s
  9450K .......... .......... .......... .......... .......... 50%  113M 0s
  9500K .......... .......... .......... .......... .......... 51%  107M 0s
  9550K .......... .......... .......... .......... .......... 51%  112M 0s
  9600K .......... .......... .......... .......... .......... 51%  107M 0s
  9650K .......... .......... .......... .......... .......... 51% 67.2M 0s
  9700K .......... .......... .......... .......... .......... 52%  114M 0s
  9750K .......... .......... .......... .......... .......... 52%  106M 0s
  9800K .......... .......... .......... .......... .......... 52%  112M 0s
  9850K .......... .......... .......... .......... .......... 53%  108M 0s
  9900K .......... .......... .......... .......... .......... 53%  111M 0s
  9950K .......... .......... .......... .......... .......... 53%  102M 0s
 10000K .......... .......... .......... .......... .......... 53%  107M 0s
 10050K .......... .......... .......... .......... .......... 54%  112M 0s
 10100K .......... .......... .......... .......... .......... 54%  109M 0s
 10150K .......... .......... .......... .......... .......... 54%  114M 0s
 10200K .......... .......... .......... .......... .......... 54%  102M 0s
 10250K .......... .......... .......... .......... .......... 55%  110M 0s
 10300K .......... .......... .......... .......... .......... 55%  102M 0s
 10350K .......... .......... .......... .......... .......... 55%  113M 0s
 10400K .......... .......... .......... .......... .......... 55%  104M 0s
 10450K .......... .......... .......... .......... .......... 56%  115M 0s
 10500K .......... .......... .......... .......... .......... 56%  111M 0s
 10550K .......... .......... .......... .......... .......... 56%  114M 0s
 10600K .......... .......... .......... .......... .......... 57%  112M 0s
 10650K .......... .......... .......... .......... .......... 57% 98.8M 0s
 10700K .......... .......... .......... .......... .......... 57%  120M 0s
 10750K .......... .......... .......... .......... .......... 57%  111M 0s
 10800K .......... .......... .......... .......... .......... 58%  105M 0s
 10850K .......... .......... .......... .......... .......... 58%  104M 0s
 10900K .......... .......... .......... .......... .......... 58%  103M 0s
 10950K .......... .......... .......... .......... .......... 58%  104M 0s
 11000K .......... .......... .......... .......... .......... 59%  110M 0s
 11050K .......... .......... .......... .......... .......... 59%  111M 0s
 11100K .......... .......... .......... .......... .......... 59%  103M 0s
 11150K .......... .......... .......... .......... .......... 60%  108M 0s
 11200K .......... .......... .......... .......... .......... 60%  111M 0s
 11250K .......... .......... .......... .......... .......... 60%  112M 0s
 11300K .......... .......... .......... .......... .......... 60%  111M 0s
 11350K .......... .......... .......... .......... .......... 61%  113M 0s
 11400K .......... .......... .......... .......... .......... 61%  111M 0s
 11450K .......... .......... .......... .......... .......... 61%  101M 0s
 11500K .......... .......... .......... .......... .......... 61%  112M 0s
 11550K .......... .......... .......... .......... .......... 62%  108M 0s
 11600K .......... .......... .......... .......... .......... 62%  113M 0s
 11650K .......... .......... .......... .......... .......... 62%  103M 0s
 11700K .......... .......... .......... .......... .......... 62%  112M 0s
 11750K .......... .......... .......... .......... .......... 63%  108M 0s
 11800K .......... .......... .......... .......... .......... 63%  119M 0s
 11850K .......... .......... .......... .......... .......... 63%  112M 0s
 11900K .......... .......... .......... .......... .......... 64% 92.4M 0s
 11950K .......... .......... .......... .......... .......... 64%  115M 0s
 12000K .......... .......... .......... .......... .......... 64%  111M 0s
 12050K .......... .......... .......... .......... .......... 64%  113M 0s
 12100K .......... .......... .......... .......... .......... 65%  106M 0s
 12150K .......... .......... .......... .......... .......... 65%  111M 0s
 12200K .......... .......... .......... .......... .......... 65% 97.0M 0s
 12250K .......... .......... .......... .......... .......... 65%  112M 0s
 12300K .......... .......... .......... .......... .......... 66%  113M 0s
 12350K .......... .......... .......... .......... .......... 66%  113M 0s
 12400K .......... .......... .......... .......... .......... 66%  111M 0s
 12450K .......... .......... .......... .......... .......... 66%  105M 0s
 12500K .......... .......... .......... .......... .......... 67%  104M 0s
 12550K .......... .......... .......... .......... .......... 67%  108M 0s
 12600K .......... .......... .......... .......... .......... 67%  111M 0s
 12650K .......... .......... .......... .......... .......... 68%  105M 0s
 12700K .......... .......... .......... .......... .......... 68%  112M 0s
 12750K .......... .......... .......... .......... .......... 68%  112M 0s
 12800K .......... .......... .......... .......... .......... 68%  108M 0s
 12850K .......... .......... .......... .......... .......... 69% 94.9M 0s
 12900K .......... .......... .......... .......... .......... 69%  105M 0s
 12950K .......... .......... .......... .......... .......... 69%  112M 0s
 13000K .......... .......... .......... .......... .......... 69% 95.4M 0s
 13050K .......... .......... .......... .......... .......... 70%  110M 0s
 13100K .......... .......... .......... .......... .......... 70%  111M 0s
 13150K .......... .......... .......... .......... .......... 70%  111M 0s
 13200K .......... .......... .......... .......... .......... 71%  112M 0s
 13250K .......... .......... .......... .......... .......... 71%  108M 0s
 13300K .......... .......... .......... .......... .......... 71%  107M 0s
 13350K .......... .......... .......... .......... .......... 71%  112M 0s
 13400K .......... .......... .......... .......... .......... 72%  111M 0s
 13450K .......... .......... .......... .......... .......... 72% 96.2M 0s
 13500K .......... .......... .......... .......... .......... 72%  112M 0s
 13550K .......... .......... .......... .......... .......... 72%  113M 0s
 13600K .......... .......... .......... .......... .......... 73%  113M 0s
 13650K .......... .......... .......... .......... .......... 73%  113M 0s
 13700K .......... .......... .......... .......... .......... 73%  107M 0s
 13750K .......... .......... .......... .......... .......... 73%  105M 0s
 13800K .......... .......... .......... .......... .......... 74%  111M 0s
 13850K .......... .......... .......... .......... .......... 74% 97.8M 0s
 13900K .......... .......... .......... .......... .......... 74%  119M 0s
 13950K .......... .......... .......... .......... .......... 75%  106M 0s
 14000K .......... .......... .......... .......... .......... 75%  108M 0s
 14050K .......... .......... .......... .......... .......... 75%  111M 0s
 14100K .......... .......... .......... .......... .......... 75%  112M 0s
 14150K .......... .......... .......... .......... .......... 76% 99.4M 0s
 14200K .......... .......... .......... .......... .......... 76%  112M 0s
 14250K .......... .......... .......... .......... .......... 76%  112M 0s
 14300K .......... .......... .......... .......... .......... 76%  108M 0s
 14350K .......... .......... .......... .......... .......... 77%  111M 0s
 14400K .......... .......... .......... .......... .......... 77%  106M 0s
 14450K .......... .......... .......... .......... .......... 77%  114M 0s
 14500K .......... .......... .......... .......... .......... 77%  111M 0s
 14550K .......... .......... .......... .......... .......... 78%  105M 0s
 14600K .......... .......... .......... .......... .......... 78%  110M 0s
 14650K .......... .......... .......... .......... .......... 78%  113M 0s
 14700K .......... .......... .......... .......... .......... 79% 97.2M 0s
 14750K .......... .......... .......... .......... .......... 79%  112M 0s
 14800K .......... .......... .......... .......... .......... 79%  106M 0s
 14850K .......... .......... .......... .......... .......... 79%  117M 0s
 14900K .......... .......... .......... .......... .......... 80%  111M 0s
 14950K .......... .......... .......... .......... .......... 80% 94.6M 0s
 15000K .......... .......... .......... .......... .......... 80%  101M 0s
 15050K .......... .......... .......... .......... .......... 80%  118M 0s
 15100K .......... .......... .......... .......... .......... 81%  111M 0s
 15150K .......... .......... .......... .......... .......... 81%  106M 0s
 15200K .......... .......... .......... .......... .......... 81% 97.8M 0s
 15250K .......... .......... .......... .......... .......... 81%  111M 0s
 15300K .......... .......... .......... .......... .......... 82%  113M 0s
 15350K .......... .......... .......... .......... .......... 82%  108M 0s
 15400K .......... .......... .......... .......... .......... 82%  111M 0s
 15450K .......... .......... .......... .......... .......... 83%  101M 0s
 15500K .......... .......... .......... .......... .......... 83% 96.9M 0s
 15550K .......... .......... .......... .......... .......... 83%  113M 0s
 15600K .......... .......... .......... .......... .......... 83%  110M 0s
 15650K .......... .......... .......... .......... .......... 84%  107M 0s
 15700K .......... .......... .......... .......... .......... 84% 96.6M 0s
 15750K .......... .......... .......... .......... .......... 84%  112M 0s
 15800K .......... .......... .......... .......... .......... 84%  108M 0s
 15850K .......... .......... .......... .......... .......... 85%  112M 0s
 15900K .......... .......... .......... .......... .......... 85%  112M 0s
 15950K .......... .......... .......... .......... .......... 85% 97.1M 0s
 16000K .......... .......... .......... .......... .......... 86%  111M 0s
 16050K .......... .......... .......... .......... .......... 86%  114M 0s
 16100K .......... .......... .......... .......... .......... 86%  110M 0s
 16150K .......... .......... .......... .......... .......... 86%  113M 0s
 16200K .......... .......... .......... .......... .......... 87%  111M 0s
 16250K .......... .......... .......... .......... .......... 87%  114M 0s
 16300K .......... .......... .......... .......... .......... 87%  110M 0s
 16350K .......... .......... .......... .......... .......... 87% 87.1M 0s
 16400K .......... .......... .......... .......... .......... 88%  126M 0s
 16450K .......... .......... .......... .......... .......... 88%  111M 0s
 16500K .......... .......... .......... .......... .......... 88%  104M 0s
 16550K .......... .......... .......... .......... .......... 88%  115M 0s
 16600K .......... .......... .......... .......... .......... 89%  111M 0s
 16650K .......... .......... .......... .......... .......... 89%  101M 0s
 16700K .......... .......... .......... .......... .......... 89%  114M 0s
 16750K .......... .......... .......... .......... .......... 90%  106M 0s
 16800K .......... .......... .......... .......... .......... 90%  114M 0s
 16850K .......... .......... .......... .......... .......... 90%  109M 0s
 16900K .......... .......... .......... .......... .......... 90%  105M 0s
 16950K .......... .......... .......... .......... .......... 91%  113M 0s
 17000K .......... .......... .......... .......... .......... 91%  111M 0s
 17050K .......... .......... .......... .......... .......... 91%  111M 0s
 17100K .......... .......... .......... .......... .......... 91%  112M 0s
 17150K .......... .......... .......... .......... .......... 92%  113M 0s
 17200K .......... .......... .......... .......... .......... 92%  103M 0s
 17250K .......... .......... .......... .......... .......... 92%  103M 0s
 17300K .......... .......... .......... .......... .......... 92%  112M 0s
 17350K .......... .......... .......... .......... .......... 93%  114M 0s
 17400K .......... .......... .......... .......... .......... 93%  112M 0s
 17450K .......... .......... .......... .......... .......... 93% 96.2M 0s
 17500K .......... .......... .......... .......... .......... 94%  110M 0s
 17550K .......... .......... .......... .......... .......... 94%  107M 0s
 17600K .......... .......... .......... .......... .......... 94%  109M 0s
 17650K .......... .......... .......... .......... .......... 94%  114M 0s
 17700K .......... .......... .......... .......... .......... 95%  109M 0s
 17750K .......... .......... .......... .......... .......... 95%  101M 0s
 17800K .......... .......... .......... .......... .......... 95%  120M 0s
 17850K .......... .......... .......... .......... .......... 95%  105M 0s
 17900K .......... .......... .......... .......... .......... 96% 97.7M 0s
 17950K .......... .......... .......... .......... .......... 96%  105M 0s
 18000K .......... .......... .......... .......... .......... 96%  102M 0s
 18050K .......... .......... .......... .......... .......... 96%  112M 0s
 18100K .......... .......... .......... .......... .......... 97%  113M 0s
 18150K .......... .......... .......... .......... .......... 97%  111M 0s
 18200K .......... .......... .......... .......... .......... 97% 97.5M 0s
 18250K .......... .......... .......... .......... .......... 98%  111M 0s
 18300K .......... .......... .......... .......... .......... 98% 97.8M 0s
 18350K .......... .......... .......... .......... .......... 98%  112M 0s
 18400K .......... .......... .......... .......... .......... 98% 93.6M 0s
 18450K .......... .......... .......... .......... .......... 99%  102M 0s
 18500K .......... .......... .......... .......... .......... 99% 98.0M 0s
 18550K .......... .......... .......... .......... .......... 99%  110M 0s
 18600K .......... .......... .......... .......... .......... 99%  113M 0s
 18650K .......... .                                          100%  104M=0.2s

2018-03-09 09:07:21 (103 MB/s) - ‘phenotype_annotation.tab’ saved [19109571/19109571]

--2018-03-09 09:07:21--  http://purl.obolibrary.org/obo/hp.obo
Reusing existing connection to proxy.charite.de:8080.
Proxy request sent, awaiting response... 302 Found
Location: https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo [following]
--2018-03-09 09:07:22--  https://raw.githubusercontent.com/obophenotype/human-phenotype-ontology/master/hp.obo
Connecting to proxy.charite.de (proxy.charite.de)|141.42.1.215|:8080... connected.
Proxy request sent, awaiting response... 200 OK
Length: 5909799 (5.6M) [text/plain]
Saving to: ‘hp.obo’

     0K .......... .......... .......... .......... ..........  0% 1.98M 3s
    50K .......... .......... .......... .......... ..........  1% 6.36M 2s
   100K .......... .......... .......... .......... ..........  2% 11.5M 1s
   150K .......... .......... .......... .......... ..........  3% 7.62M 1s
   200K .......... .......... .......... .......... ..........  4% 9.39M 1s
   250K .......... .......... .......... .......... ..........  5% 8.99M 1s
   300K .......... .......... .......... .......... ..........  6% 8.95M 1s
   350K .......... .......... .......... .......... ..........  6% 9.52M 1s
   400K .......... .......... .......... .......... ..........  7% 9.04M 1s
   450K .......... .......... .......... .......... ..........  8% 9.16M 1s
   500K .......... .......... .......... .......... ..........  9% 11.3M 1s
   550K .......... .......... .......... .......... .......... 10% 12.8M 1s
   600K .......... .......... .......... .......... .......... 11% 9.74M 1s
   650K .......... .......... .......... .......... .......... 12% 12.7M 1s
   700K .......... .......... .......... .......... .......... 12% 8.87M 1s
   750K .......... .......... .......... .......... .......... 13% 17.3M 1s
   800K .......... .......... .......... .......... .......... 14% 11.0M 1s
   850K .......... .......... .......... .......... .......... 15% 9.22M 1s
   900K .......... .......... .......... .......... .......... 16% 13.3M 1s
   950K .......... .......... .......... .......... .......... 17% 10.5M 1s
  1000K .......... .......... .......... .......... .......... 18% 15.0M 1s
  1050K .......... .......... .......... .......... .......... 19% 15.6M 1s
  1100K .......... .......... .......... .......... .......... 19% 10.5M 1s
  1150K .......... .......... .......... .......... .......... 20% 15.2M 1s
  1200K .......... .......... .......... .......... .......... 21% 12.5M 0s
  1250K .......... .......... .......... .......... .......... 22% 10.7M 0s
  1300K .......... .......... .......... .......... .......... 23% 11.6M 0s
  1350K .......... .......... .......... .......... .......... 24% 16.4M 0s
  1400K .......... .......... .......... .......... .......... 25% 14.3M 0s
  1450K .......... .......... .......... .......... .......... 25% 16.9M 0s
  1500K .......... .......... .......... .......... .......... 26% 15.8M 0s
  1550K .......... .......... .......... .......... .......... 27% 18.4M 0s
  1600K .......... .......... .......... .......... .......... 28% 8.81M 0s
  1650K .......... .......... .......... .......... .......... 29% 14.6M 0s
  1700K .......... .......... .......... .......... .......... 30% 15.1M 0s
  1750K .......... .......... .......... .......... .......... 31% 25.7M 0s
  1800K .......... .......... .......... .......... .......... 32% 17.1M 0s
  1850K .......... .......... .......... .......... .......... 32% 18.1M 0s
  1900K .......... .......... .......... .......... .......... 33% 13.0M 0s
  1950K .......... .......... .......... .......... .......... 34% 17.4M 0s
  2000K .......... .......... .......... .......... .......... 35% 14.8M 0s
  2050K .......... .......... .......... .......... .......... 36% 19.5M 0s
  2100K .......... .......... .......... .......... .......... 37% 12.8M 0s
  2150K .......... .......... .......... .......... .......... 38% 26.9M 0s
  2200K .......... .......... .......... .......... .......... 38% 19.2M 0s
  2250K .......... .......... .......... .......... .......... 39% 19.3M 0s
  2300K .......... .......... .......... .......... .......... 40% 13.4M 0s
  2350K .......... .......... .......... .......... .......... 41% 22.4M 0s
  2400K .......... .......... .......... .......... .......... 42% 19.4M 0s
  2450K .......... .......... .......... .......... .......... 43% 20.6M 0s
  2500K .......... .......... .......... .......... .......... 44% 12.2M 0s
  2550K .......... .......... .......... .......... .......... 45% 28.2M 0s
  2600K .......... .......... .......... .......... .......... 45% 19.2M 0s
  2650K .......... .......... .......... .......... .......... 46% 22.8M 0s
  2700K .......... .......... .......... .......... .......... 47% 12.6M 0s
  2750K .......... .......... .......... .......... .......... 48% 29.9M 0s
  2800K .......... .......... .......... .......... .......... 49% 19.9M 0s
  2850K .......... .......... .......... .......... .......... 50% 19.5M 0s
  2900K .......... .......... .......... .......... .......... 51% 12.3M 0s
  2950K .......... .......... .......... .......... .......... 51% 31.8M 0s
  3000K .......... .......... .......... .......... .......... 52% 26.8M 0s
  3050K .......... .......... .......... .......... .......... 53% 21.2M 0s
  3100K .......... .......... .......... .......... .......... 54% 26.1M 0s
  3150K .......... .......... .......... .......... .......... 55% 15.5M 0s
  3200K .......... .......... .......... .......... .......... 56% 18.8M 0s
  3250K .......... .......... .......... .......... .......... 57% 28.5M 0s
  3300K .......... .......... .......... .......... .......... 58% 22.5M 0s
  3350K .......... .......... .......... .......... .......... 58% 13.2M 0s
  3400K .......... .......... .......... .......... .......... 59% 39.3M 0s
  3450K .......... .......... .......... .......... .......... 60% 34.8M 0s
  3500K .......... .......... .......... .......... .......... 61% 23.4M 0s
  3550K .......... .......... .......... .......... .......... 62% 28.8M 0s
  3600K .......... .......... .......... .......... .......... 63% 12.8M 0s
  3650K .......... .......... .......... .......... .......... 64% 23.0M 0s
  3700K .......... .......... .......... .......... .......... 64% 33.0M 0s
  3750K .......... .......... .......... .......... .......... 65% 28.8M 0s
  3800K .......... .......... .......... .......... .......... 66% 31.9M 0s
  3850K .......... .......... .......... .......... .......... 67% 25.8M 0s
  3900K .......... .......... .......... .......... .......... 68% 13.4M 0s
  3950K .......... .......... .......... .......... .......... 69% 41.0M 0s
  4000K .......... .......... .......... .......... .......... 70% 21.2M 0s
  4050K .......... .......... .......... .......... .......... 71% 32.2M 0s
  4100K .......... .......... .......... .......... .......... 71% 14.8M 0s
  4150K .......... .......... .......... .......... .......... 72% 10.2M 0s
  4200K .......... .......... .......... .......... .......... 73% 25.0M 0s
  4250K .......... .......... .......... .......... .......... 74% 29.0M 0s
  4300K .......... .......... .......... .......... .......... 75% 36.6M 0s
  4350K .......... .......... .......... .......... .......... 76% 94.1M 0s
  4400K .......... .......... .......... .......... .......... 77% 38.3M 0s
  4450K .......... .......... .......... .......... .......... 77% 10.1M 0s
  4500K .......... .......... .......... .......... .......... 78% 10.1M 0s
  4550K .......... .......... .......... .......... .......... 79% 58.8M 0s
  4600K .......... .......... .......... .......... .......... 80% 97.3M 0s
  4650K .......... .......... .......... .......... .......... 81% 41.7M 0s
  4700K .......... .......... .......... .......... .......... 82% 37.6M 0s
  4750K .......... .......... .......... .......... .......... 83% 17.9M 0s
  4800K .......... .......... .......... .......... .......... 84% 36.5M 0s
  4850K .......... .......... .......... .......... .......... 84% 52.2M 0s
  4900K .......... .......... .......... .......... .......... 85% 21.0M 0s
  4950K .......... .......... .......... .......... .......... 86% 58.3M 0s
  5000K .......... .......... .......... .......... .......... 87% 18.3M 0s
  5050K .......... .......... .......... .......... .......... 88% 50.1M 0s
  5100K .......... .......... .......... .......... .......... 89% 16.7M 0s
  5150K .......... .......... .......... .......... .......... 90% 59.8M 0s
  5200K .......... .......... .......... .......... .......... 90% 25.7M 0s
  5250K .......... .......... .......... .......... .......... 91% 44.3M 0s
  5300K .......... .......... .......... .......... .......... 92% 23.6M 0s
  5350K .......... .......... .......... .......... .......... 93% 39.0M 0s
  5400K .......... .......... .......... .......... .......... 94% 13.6M 0s
  5450K .......... .......... .......... .......... .......... 95%  134M 0s
  5500K .......... .......... .......... .......... .......... 96% 42.3M 0s
  5550K .......... .......... .......... .......... .......... 97% 34.5M 0s
  5600K .......... .......... .......... .......... .......... 97% 21.1M 0s
  5650K .......... .......... .......... .......... .......... 98% 57.5M 0s
  5700K .......... .......... .......... .......... .......... 99% 32.0M 0s
  5750K .......... .......... .                               100%  122M=0.3s

Last-modified header missing -- time-stamps turned off.
2018-03-09 09:07:23 (16.2 MB/s) - ‘hp.obo’ saved [5909799/5909799]

FINISHED --2018-03-09 09:07:23--
Total wall clock time: 13s
Downloaded: 5 files, 45M in 2.0s (22.2 MB/s)
java -Xmx1G -jar jar/createGene2Phenotype.jar --data "data" --out-folder "."
User defined parameters set to:
hpo path: /var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation/data/hp.obo (exists: true)
out path: /var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation/. (exists: true)
 data path: /var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation/data (exists: true)
parse: /var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation/data/hp.obo
Mar 09, 2018 9:07:23 AM ontologizer.go.OBOParser doParse
INFO: Got 13537 terms and 17162 relations in 277 ms
Details of parsed obo file:
  data-version:		releases/2018-03-08
  format:		1.2
  term definitions:	13537
Mar 09, 2018 9:07:23 AM ontologizer.go.Ontology assignLevel1TermsAndFixRoot
INFO: Ontology contains a single level-one term (All (HP:0000001)
Mar 09, 2018 9:07:24 AM ontologizer.go.Ontology assignLevel1TermsAndFixRoot
INFO: Ontology contains a single level-one term (Phenotypic abnormality (HP:0000118)
WARN: Frequency of 4165 terms was zero!!
Set IC of these to : 9.239122173401634 = -1 * (log(1 / 10292)
mims:10384 with inh: 6910
parse NCBI
summary of gene_info-file
  other: 860
  tRNA: 599
  rRNA: 59
  scRNA: 4
  biological-region: 2156
  protein-coding: 20452
  ncRNA: 17698
  pseudo: 16410
  snRNA: 64
  snoRNA: 541
  unknown: 1763
entrez2symbol size: 42433
there were 2 unidentified gene-IDs: [107305681, 2439]
diseaseid-to-entrezid: 4633
ORPHANETPARSING: orphadisease2HGNCgenes:3676
ORPHANETPARSING: hgncid2entrez:27346
there were 30 unmappable HGNC-IDs: [3082, 14252, 37475, 21340, 3101, 33472, 30161, 22993, 34382, 22433, 35416, 31376, 39436, 32944, 17204, 3777, 12599, 26071, 20684, 14260, 33240, 43726, 25855, 8141, 43724, 32314, 33445, 16706, 33485, 13730]
diseaseId2entry.size(): 10384
 omim: 7323
 orphanet: 3014
 others: 47
Disease entries with at least one known disease gene: 5893
Disease entries with at least 1 HPO term(s) (from phenotypic abn.): 10292
generating files for source-filter: OMIM and frequency-filter: FREQUENT_FEATURES
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
generating files for source-filter: OMIM and frequency-filter: ALL_FREQUENCIES
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
generating files for source-filter: ORPHA and frequency-filter: FREQUENT_FEATURES
annotation: Sensorineural hearing impairment (HP:0000407) orphadata 0.12
filters: true/false
annotation: Conjunctivitis (HP:0000509) orphadata 0.12
filters: true/false
annotation: Hyperhidrosis (HP:0000975) orphadata 0.9
filters: true/true
annotation: Pruritus (HP:0000989) orphadata 0.9
filters: true/true
annotation: Urticaria (HP:0001025) orphadata 0.9
filters: true/true
annotation: Arthritis (HP:0001369) orphadata 0.9
filters: true/true
annotation: Dehydration (HP:0001944) orphadata 0.12
filters: true/false
annotation: Fever (HP:0001945) orphadata 0.9
filters: true/true
annotation: Polydipsia (HP:0001959) orphadata 0.12
filters: true/false
annotation: Nausea and vomiting (HP:0002017) orphadata 0.5
filters: true/true
annotation: Abdominal pain (HP:0002027) orphadata 0.12
filters: true/false
annotation: Headache (HP:0002315) orphadata 0.5
filters: true/true
annotation: Arthralgia (HP:0002829) orphadata 0.12
filters: true/false
annotation: Myalgia (HP:0003326) orphadata 0.9
filters: true/true
annotation: Erythema (HP:0010783) orphadata 0.9
filters: true/true
annotation: Fatigue (HP:0012378) orphadata 0.9
filters: true/true
annotation: Dysesthesia (HP:0012534) orphadata 0.9
filters: true/true
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
generating files for source-filter: ORPHA and frequency-filter: ALL_FREQUENCIES
annotation: Sensorineural hearing impairment (HP:0000407) orphadata 0.12
filters: true/true
annotation: Conjunctivitis (HP:0000509) orphadata 0.12
filters: true/true
annotation: Hyperhidrosis (HP:0000975) orphadata 0.9
filters: true/true
annotation: Pruritus (HP:0000989) orphadata 0.9
filters: true/true
annotation: Urticaria (HP:0001025) orphadata 0.9
filters: true/true
annotation: Arthritis (HP:0001369) orphadata 0.9
filters: true/true
annotation: Dehydration (HP:0001944) orphadata 0.12
filters: true/true
annotation: Fever (HP:0001945) orphadata 0.9
filters: true/true
annotation: Polydipsia (HP:0001959) orphadata 0.12
filters: true/true
annotation: Nausea and vomiting (HP:0002017) orphadata 0.5
filters: true/true
annotation: Abdominal pain (HP:0002027) orphadata 0.12
filters: true/true
annotation: Headache (HP:0002315) orphadata 0.5
filters: true/true
annotation: Arthralgia (HP:0002829) orphadata 0.12
filters: true/true
annotation: Myalgia (HP:0003326) orphadata 0.9
filters: true/true
annotation: Erythema (HP:0010783) orphadata 0.9
filters: true/true
annotation: Fatigue (HP:0012378) orphadata 0.9
filters: true/true
annotation: Dysesthesia (HP:0012534) orphadata 0.9
filters: true/true
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
generating files for source-filter: ALL_SOURCES and frequency-filter: FREQUENT_FEATURES
annotation: Sensorineural hearing impairment (HP:0000407) orphadata 0.12
filters: true/false
annotation: Conjunctivitis (HP:0000509) orphadata 0.12
filters: true/false
annotation: Hyperhidrosis (HP:0000975) orphadata 0.9
filters: true/true
annotation: Pruritus (HP:0000989) orphadata 0.9
filters: true/true
annotation: Urticaria (HP:0001025) orphadata 0.9
filters: true/true
annotation: Arthritis (HP:0001369) orphadata 0.9
filters: true/true
annotation: Dehydration (HP:0001944) orphadata 0.12
filters: true/false
annotation: Fever (HP:0001945) orphadata 0.9
filters: true/true
annotation: Polydipsia (HP:0001959) orphadata 0.12
filters: true/false
annotation: Nausea and vomiting (HP:0002017) orphadata 0.5
filters: true/true
annotation: Abdominal pain (HP:0002027) orphadata 0.12
filters: true/false
annotation: Headache (HP:0002315) orphadata 0.5
filters: true/true
annotation: Arthralgia (HP:0002829) orphadata 0.12
filters: true/false
annotation: Myalgia (HP:0003326) orphadata 0.9
filters: true/true
annotation: Erythema (HP:0010783) orphadata 0.9
filters: true/true
annotation: Fatigue (HP:0012378) orphadata 0.9
filters: true/true
annotation: Dysesthesia (HP:0012534) orphadata 0.9
filters: true/true
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
generating files for source-filter: ALL_SOURCES and frequency-filter: ALL_FREQUENCIES
annotation: Sensorineural hearing impairment (HP:0000407) orphadata 0.12
filters: true/true
annotation: Conjunctivitis (HP:0000509) orphadata 0.12
filters: true/true
annotation: Hyperhidrosis (HP:0000975) orphadata 0.9
filters: true/true
annotation: Pruritus (HP:0000989) orphadata 0.9
filters: true/true
annotation: Urticaria (HP:0001025) orphadata 0.9
filters: true/true
annotation: Arthritis (HP:0001369) orphadata 0.9
filters: true/true
annotation: Dehydration (HP:0001944) orphadata 0.12
filters: true/true
annotation: Fever (HP:0001945) orphadata 0.9
filters: true/true
annotation: Polydipsia (HP:0001959) orphadata 0.12
filters: true/true
annotation: Nausea and vomiting (HP:0002017) orphadata 0.5
filters: true/true
annotation: Abdominal pain (HP:0002027) orphadata 0.12
filters: true/true
annotation: Headache (HP:0002315) orphadata 0.5
filters: true/true
annotation: Arthralgia (HP:0002829) orphadata 0.12
filters: true/true
annotation: Myalgia (HP:0003326) orphadata 0.9
filters: true/true
annotation: Erythema (HP:0010783) orphadata 0.9
filters: true/true
annotation: Fatigue (HP:0012378) orphadata 0.9
filters: true/true
annotation: Dysesthesia (HP:0012534) orphadata 0.9
filters: true/true
debug disease = AnnotatedItem [itemId=ORPHA:1326, name=Camptodactyly syndrome, Guadalajara type 2, positiveAnnotations=13, negativeAnnotations=0]
annotations was null
java -Xmx1G -jar jar/createMysqlHPODbVersion.jar --data "data" --out-folder "." --database-schema "../tools/hpo_mysqldb/schemabackup_2010-06-18.sql"  --mysql-user "hudson_mysql" --mysql-password "hpo_hudson" --mysql-host "localhost" --mysql-port "3306"
loading ontology and annotations
loading: data/hp.obo
parse: data/hp.obo
Mar 09, 2018 9:07:38 AM ontologizer.go.OBOParser doParse
INFO: Got 13537 terms and 17162 relations in 235 ms
Details of parsed obo file:
  data-version:		releases/2018-03-08
  format:		1.2
  term definitions:	13537
Mar 09, 2018 9:07:38 AM ontologizer.go.Ontology assignLevel1TermsAndFixRoot
INFO: Ontology contains a single level-one term (All (HP:0000001)
Mar 09, 2018 9:07:38 AM ontologizer.go.Ontology assignLevel1TermsAndFixRoot
INFO: Ontology contains a single level-one term (Phenotypic abnormality (HP:0000118)
WARN: Frequency of 4165 terms was zero!!
Set IC of these to : 9.239122173401634 = -1 * (log(1 / 10292)
mims:10384 with inh: 6910
parse NCBI
summary of gene_info-file
  other: 860
  tRNA: 599
  rRNA: 59
  scRNA: 4
  biological-region: 2156
  protein-coding: 20452
  ncRNA: 17698
  pseudo: 16410
  snRNA: 64
  snoRNA: 541
  unknown: 1763
entrez2symbol size: 42433
there were 2 unidentified gene-IDs: [107305681, 2439]
diseaseid-to-entrezid: 4633
ORPHANETPARSING: orphadisease2HGNCgenes:3676
ORPHANETPARSING: hgncid2entrez:27346
there were 30 unmappable HGNC-IDs: [3082, 14252, 37475, 21340, 3101, 33472, 30161, 22993, 34382, 22433, 35416, 31376, 39436, 32944, 17204, 3777, 12599, 26071, 20684, 14260, 33240, 43726, 25855, 8141, 43724, 32314, 33445, 16706, 33485, 13730]
diseaseId2entry.size(): 10384
 omim: 7323
 orphanet: 3014
 others: 47
Disease entries with at least one known disease gene: 5893
Disease entries with at least 1 HPO term(s) (from phenotypic abn.): 10292
03_2018
make connection / created db
connecting to jdbc:mysql://localhost:3306/mysql
dropping database: MYHPO_03_2018 (if exists)
creating database: MYHPO_03_2018
create schema (tables, relations)
Execute: [mysql, --user=hudson_mysql, --password=hpo_hudson, --host=localhost, --port=3306, MYHPO_03_2018, -e, source ../tools/hpo_mysqldb/schemabackup_2010-06-18.sql]
Done restore.
insert terms
WARN: invalid external object: 4493 / Fyler
WARN: invalid external object: 4504 / Fyler
WARN: invalid external object: 4510 / Fyler
WARN: invalid external object: 4507 / Fyler
WARN: invalid external object: 4503 / Fyler
WARN: invalid external object: 4508 / Fyler
WARN: invalid external object: 4509 / Fyler
WARN: invalid external object: 4502 / Fyler
WARN: invalid external object: 4876 / Fyler
WARN: invalid external object: 4875 / Fyler
WARN: invalid external object: 4310 / Fyler
WARN: invalid external object: 4335 / Fyler
WARN: invalid external object: 4163 / Fyler
WARN: invalid external object: 4868 / Fyler
WARN: invalid external object: 4203 / Fyler
WARN: invalid external object: 4865 / Fyler
WARN: invalid external object: 4864 / Fyler
WARN: invalid external object: 4877 / Fyler
WARN: invalid external object: 4311 / Fyler
WARN: invalid external object: 4866 / Fyler
WARN: invalid external object: 4174 / Fyler
WARN: invalid external object: 4321 / Fyler
WARN: invalid external object: 4338 / Fyler
WARN: invalid external object: 4336 / Fyler
WARN: invalid external object: 4445 / Fyler
WARN: invalid external object: 4404 / Fyler
WARN: invalid external object: 1300 / Fyler
WARN: invalid external object: 2050 / Fyler
WARN: invalid external object: 1533 / Fyler
WARN: invalid external object: 1840 / Fyler
WARN: invalid external object: 1600 / Fyler
WARN: invalid external object: 1602 / Fyler
WARN: invalid external object: 1611 / Fyler
WARN: invalid external object: 2100 / Fyler
WARN: invalid external object: 1843 / Fyler
WARN: invalid external object: 1400 / Fyler
WARN: invalid external object: 1408 / Fyler
WARN: invalid external object: 1411 / Fyler
WARN: invalid external object: 0110 / Fyler
WARN: invalid external object: 110 / Fyler
WARN: invalid external object: 1151 / Fyler
WARN: invalid external object: 2020 / Fyler
WARN: invalid external object: 0500 / Fyler
WARN: invalid external object: 500 / Fyler
WARN: invalid external object: 3609 / Fyler
WARN: invalid external object: 1120 / Fyler
WARN: invalid external object: 1453 / Fyler
WARN: invalid external object: 0170 / Fyler
WARN: invalid external object: 170 / Fyler
WARN: invalid external object: 2000 / Fyler
WARN: invalid external object: 7013 / Fyler
WARN: invalid external object: 0100 / Fyler
WARN: invalid external object: 100 / Fyler
WARN: invalid external object: 1900 / Fyler
WARN: invalid external object: 1940 / Fyler
WARN: invalid external object: 1733 / Fyler
WARN: invalid external object: 1820 / Fyler
WARN: invalid external object: 1810 / Fyler
WARN: invalid external object: 3608 / Fyler
WARN: invalid external object: 1511 / Fyler
WARN: invalid external object: 600 / Fyler
WARN: invalid external object: 606 / Fyler
WARN: invalid external object: 4771 / Fyler
WARN: invalid external object: 4772 / Fyler
WARN: invalid external object: 0200 / Fyler
WARN: invalid external object: 200 / Fyler
WARN: invalid external object: 4171 / Fyler
WARN: invalid external object: 2634 / Fyler
WARN: invalid external object: 4444 / Fyler
WARN: invalid external object: 4402 / Fyler
WARN: invalid external object: 4443 / Fyler
WARN: invalid external object: 4412 / Fyler
WARN: invalid external object: 4406 / Fyler
WARN: invalid external object: 4332 / Fyler
WARN: invalid external object: 2201 / Fyler
WARN: invalid external object: 4157 / Fyler
WARN: invalid external object: 4309 / Fyler
WARN: invalid external object: 4234 / Fyler
WARN: invalid external object: 4202 / Fyler
WARN: invalid external object: 2399 / Fyler
WARN: invalid external object: 1432 / Fyler
WARN: invalid external object: 4160 / Fyler
WARN: invalid external object: 4200 / Fyler
WARN: invalid external object: 3816 / Fyler
WARN: invalid external object: 4108 / Fyler
WARN: invalid external object: 4414 / Fyler
WARN: invalid external object: 1430 / Fyler
WARN: invalid external object: 0510 / Fyler
WARN: invalid external object: 510 / Fyler
WARN: invalid external object: 1622 / Fyler
WARN: invalid external object: 7160 / Fyler
WARN: invalid external object: 1821 / Fyler
WARN: invalid external object: 2301 / Fyler
WARN: invalid external object: 2708 / Fyler
WARN: invalid external object: 2754 / Fyler
WARN: invalid external object: 2310 / Fyler
WARN: invalid external object: 2701 / Fyler
WARN: invalid external object: 2966 / Fyler
WARN: invalid external object: 4870 / Fyler
WARN: invalid external object: 2706 / Fyler
WARN: invalid external object: 1827 / Fyler
WARN: invalid external object: 2333 / Fyler
WARN: invalid external object: 3040 / Fyler
WARN: invalid external object: 0900 / Fyler
WARN: invalid external object: 900 / Fyler
WARN: invalid external object: 1161 / Fyler
WARN: invalid external object: 1601 / Fyler
WARN: invalid external object: 4232 / Fyler
WARN: invalid external object: 4206 / Fyler
WARN: invalid external object: 4492 / Fyler
WARN: invalid external object: 3002 / Fyler
WARN: invalid external object: 2210 / Fyler
WARN: invalid external object: 1889 / Fyler
WARN: invalid external object: 0606 / Fyler
WARN: invalid external object: 1100 / Fyler
WARN: invalid external object: 3100 / Fyler
WARN: invalid external object: 10.1007/978-0-387-79948-3_2046 / DOI
WARN: invalid external object: 0005291 / MP
WARN: invalid external object: 4173 / Fyler
WARN: invalid external object: 1815 / Fyler
WARN: invalid external object: 4103 / Fyler
WARN: invalid external object: 1110 / Fyler
WARN: invalid external object: 2030 / Fyler
WARN: invalid external object: 3031 / Fyler
WARN: invalid external object: 2760 / Fyler
WARN: invalid external object: 1001 / Fyler
WARN: invalid external object: 2600 / Fyler
WARN: invalid external object: 0005555 / MP
WARN: invalid external object: 0010210 / MP
WARN: invalid external object: 0003009 / MP
WARN: invalid external object: 0008556 / MP
WARN: invalid external object: 4133 / Fyler
WARN: invalid external object: 0004947 / MP
WARN: invalid external object: 0011478 / MP
WARN: invalid external object: 4874 / Fyler
WARN: invalid external object: 0150 / Fyler
WARN: invalid external object: 150 / Fyler
WARN: invalid external object: 0184 / Fyler
WARN: invalid external object: 184 / Fyler
WARN: invalid external object: 0310 / Fyler
WARN: invalid external object: 310 / Fyler
WARN: invalid external object: 1140 / Fyler
WARN: invalid external object: 2854 / Fyler
WARN: invalid external object: 2010 / Fyler
WARN: invalid external object: 1720 / Fyler
WARN: invalid external object: 1121 / Fyler
WARN: invalid external object: 0650 / Fyler
WARN: invalid external object: 650 / Fyler
WARN: invalid external object: 2761 / Fyler
WARN: invalid external object: 0140 / Fyler
WARN: invalid external object: 140 / Fyler
WARN: invalid external object: 0560 / Fyler
WARN: invalid external object: 560 / Fyler
WARN: invalid external object: 0520 / Fyler
WARN: invalid external object: 520 / Fyler
WARN: invalid external object: 0530 / Fyler
WARN: invalid external object: 530 / Fyler
WARN: invalid external object: 0540 / Fyler
WARN: invalid external object: 540 / Fyler
WARN: invalid external object: 1241 / Fyler
WARN: invalid external object: 1250 / Fyler
WARN: invalid external object: 1252 / Fyler
WARN: invalid external object: 1340 / Fyler
WARN: invalid external object: 1320 / Fyler
WARN: invalid external object: 1910 / Fyler
WARN: invalid external object: 3101 / Fyler
WARN: invalid external object: 2230 / Fyler
WARN: invalid external object: 2840 / Fyler
WARN: invalid external object: 2316 / Fyler
WARN: invalid external object: 0604 / Fyler
WARN: invalid external object: 604 / Fyler
WARN: invalid external object: 0603 / Fyler
WARN: invalid external object: 603 / Fyler
WARN: invalid external object: 0550 / Fyler
WARN: invalid external object: 550 / Fyler
WARN: invalid external object: 0400 / Fyler
WARN: invalid external object: 400 / Fyler
WARN: invalid external object: 1330 / Fyler
WARN: invalid external object: 1310 / Fyler
WARN: invalid external object: 7010 / Fyler
WARN: invalid external object: 0910 / Fyler
WARN: invalid external object: 910 / Fyler
WARN: invalid external object: 0920 / Fyler
WARN: invalid external object: 0930 / Fyler
WARN: invalid external object: 920 / Fyler
WARN: invalid external object: 930 / Fyler
WARN: invalid external object: 0950 / Fyler
WARN: invalid external object: 950 / Fyler
WARN: invalid external object: 0008271 / MP
WARN: invalid external object: 2002 / Fyler
WARN: invalid external object: 2720 / Fyler
WARN: invalid external object: 4512 / Fyler
WARN: invalid external object: 4235 / Fyler
WARN: invalid external object: 3632007 / PMID
WARN: invalid external object: 2700 / Fyler
WARN: invalid external object: 2704 / Fyler
WARN: invalid external object: 0001764 / MP
WARN: invalid external object: 4863 / Fyler
WARN: invalid external object: 26079824 / PMID
WARN: invalid external object: 0005257 / MP
WARN: invalid external object: 4135 / Fyler
WARN: invalid external object: 4300 / Fyler
WARN: invalid external object: 7014 / Fyler
WARN: invalid external object: 4447 / Fyler
WARN: invalid external object: 4339 / Fyler
WARN: invalid external object: 2820 / Fyler
WARN: invalid external object: 2810 / Fyler
WARN: invalid external object: 1452 / Fyler
WARN: invalid external object: 3010 / Fyler
WARN: invalid external object: 1770 / Fyler
WARN: invalid external object: 20590416 / pmid
WARN: invalid external object: 16671223 / pmid
WARN: invalid external object: 24618488 / pmid
WARN: invalid external object: 24467750 / pmid
WARN: invalid external object: 24808988 / pmid
WARN: invalid external object: 15961866 / pmid
WARN: invalid external object: 17490914 / pmid
WARN: invalid external object: 20643692 / pmid
WARN: invalid external object: 24046799 / pmid
WARN: invalid external object: 24822139 / pmid
WARN: invalid external object: 16391543 / pmid
WARN: invalid external object: 10199473 / pmid
WARN: invalid external object: 12089752 / pmid
WARN: invalid external object: 23513084 / pmid
WARN: invalid external object: 22544358 / pmid
WARN: invalid external object: 21712856 / pmid
WARN: invalid external object: 3409932 / pmid
WARN: invalid external object: 18691338 / pmid
WARN: invalid external object: 4058748 / pmid
WARN: invalid external object: 21931493 / pmid
WARN: invalid external object: //emedicine.medscape.com/article/281484-overview / http
WARN: invalid external object: 1771 / Fyler
WARN: invalid external object: 2859 / Fyler
WARN: invalid external object: 0190 / Fyler
WARN: invalid external object: 190 / Fyler
WARN: invalid external object: 3129 / Fyler
WARN: invalid external object: 2346 / Fyler
WARN: invalid external object: 3000 / Fyler
WARN: invalid external object: 26379327 / PMID
WARN: invalid external object: 18616733 / PMID
WARN: invalid external object: 18809899 / PMID
WARN: invalid external object: 3011 / Fyler
WARN: invalid external object: 3020 / Fyler
WARN: invalid external object: 0700 / Fyler
WARN: invalid external object: 700 / Fyler
WARN: invalid external object: 4013 / Fyler
WARN: invalid external object: sjwang / RGD
WARN: invalid external object: 2233 / Fyler
WARN: invalid external object: 2780 / Fyler
WARN: invalid external object: 2240 / Fyler
WARN: invalid external object: 3817 / Fyler
WARN: invalid external object: 1652 / Fyler
WARN: invalid external object: 1480 / Fyler
WARN: invalid external object: 1486 / Fyler
WARN: invalid external object: 1484 / Fyler
WARN: invalid external object: 2732 / Fyler
WARN: invalid external object: 4867 / Fyler
WARN: invalid external object: 2841 / Fyler
WARN: invalid external object: 1431 / Fyler
insert graph-path
  allpathes.size() = 204435
insert term2term
Insert annotations:
dumping to file: ./MYHPO_03_2018.sql
  calling: [mysqldump, --user=hudson_mysql, --password=hpo_hudson, --host=localhost, --port=3306, MYHPO_03_2018]
Done dumping to file.
exiting...
make: Leaving directory '/var/lib/jenkins/jobs/hpo.annotations.monthly/workspace/annotation'
Archiving artifacts
Sending e-mails to: sebastian.koehler@charite.de
Finished: SUCCESS