Started 6 days 4 hr ago
Took 1 min 9 sec

Failed Build #1253 (Jun 13, 2018 9:41:38 PM)

Revision: 5046
Changes
  1. Merge pull request #210 from monarch-initiative/OMIM_180295

    added additional annotations (detail)
  2. added additional annotations (detail)
  3. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data

    * 'master' of https://github.com/monarch-initiative/hpo-annotation-data:
      added new annotation (detail)
  4. Update OMIM:601202. #208 (detail)
  5. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data (detail)
  6. Update OMIM:610753. #208 (detail)
  7. added new annotation (detail)
  8. Updated OMIM:187260. #208 (detail)
  9. Update OMIM:313500 annotations (detail)
  10. Update OMIM:615413. #208. (detail)
  11. Added OMIM:137130 to the omit-list.txt. Fixed typo in ignore_for_annotation.txt.  Added annotations for OMIM-607453 Autosomal dominant deafness. Reference #208 (detail)
  12. new disease (detail)
  13. obsoleting 189980, a gene entry (detail)
  14. merge Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data (detail)
  15. revising omit list (detail)
  16. obsoleting 151440, this is not a Mendelian disease and the connection to somatic mutations and cancer is tenuous (detail)
  17. updating 615861 (detail)
  18. adding entires to omit list (detail)
  19. correcting lower case omim (detail)
  20. moving 151441, a gene entry (detail)
  21. moving 109560, a gene entry (detail)
  22. new annotations (detail)
  23. new entry: 617808 (detail)
  24. updating annotation (detail)
  25. updates (detail)
  26. Adding entry 617895 (detail)
  27. new disease annotation (detail)
  28. updating reference (detail)
  29. fixing lack of name error (detail)
  30. updating annots (detail)
  31. updating 232600 (detail)
  32. revision (detail)
  33. Updating readme (detail)
  34. obsoleting moved to entries (detail)
  35. obsoleting moved to entries (detail)
  36. working on moved entries (detail)
  37. revising moved to entries (detail)
  38. merging (detail)
  39. new revisions (detail)
  40. Removing OMIM-305660, a gene entry (detail)
  41. updating annotations (detail)
  42. revising moved to entries (detail)
  43. Adding 300148 and obsoleting some moved to entries (detail)
  44. updating annotations (detail)
  45. Adding new disease 617784 (detail)
  46. beginning to put moved to entries in obsoleted folder (detail)
  47. updating 616483 (detail)
  48. new annotation revisions (detail)
  49. revising annotations (detail)
  50. removing old phenote configuration file (detail)
  51. makefile bugfix (detail)
  52. move peters changes here (detail)
  53. revert changes (detail)
  54. Merge pull request #184 from monarch-initiative/new_makefile

    Makefile for new V2 small files (detail)
  55. modifying makefile to download HpoAnnotQc (detail)
  56. Makefile for new V2 small files (detail)
  57. produce test.tab file (detail)
  58. make it not fail (detail)
  59. add folder for new release (detail)
  60. Removing moved to entry 610765; the replacing entry 602400 is OK (detail)
  61. removing 194533, a gene entry (detail)
  62. removing 311040, a gene entry (detail)
  63. removing 147100, a gene entry (detail)
  64. removing 104311, a gene entry (detail)
  65. removing 176310, a gene entry (detail)
  66. removing 314980, a gene entry (detail)
  67. removing 217050, a gene entry (detail)
  68. removing 176873, a gene entry (detail)
  69. removing 222745, a gene entry (detail)
  70. removing 615133, a gene entry (detail)
  71. removing 312420, a gene entry (detail)
  72. removing 217030, a gene entry (detail)
  73. removing 311030, a gene entry (detail)
  74. removing 312760, a gene entry (detail)
  75. removing 136820, a gene entry (detail)
  76. removing 167770, a gene entry (detail)
  77. removing 311790, a gene entry (detail)
  78. removing 191160, a gene entry (detail)
  79. removing 305670, a gene entry (detail)
  80. removing 107690, a gene entry (detail)
  81. Removing 410000, a gene entry (detail)
  82. removing 302020, a gene entry (detail)
  83. removing 600635, a gene entry (detail)
  84. removing 178635, a gene entry (detail)
  85. removing 173850, a gene entry (detail)
  86. removing 425000 (detail)
  87. removing 142310, a gene entry (detail)
  88. removing 305660, a gene entry (detail)
  89. removing 430000, a gene entry (detail)
  90. removing 179618, a gene entry (detail)
  91. removing 179780, a gene entry (detail)
  92. removing 187040, a gene entry (detail)
  93. removing 314200, a gene entry (detail)
  94. removing 490000, a gene entry (detail)
  95. removing 426000, a gene entry (detail)
  96. removing 606867, a gene entry (detail)
  97. removing 141860, not a phenotype locus (detail)
  98. removing 612666, a gene entry (detail)
  99. removing 247980, a gene entry (detail)
  100. 600541, a gene entry (detail)
  101. removing 605431, a gene entry (detail)
  102. removing 302650, a gene entry (detail)
  103. removing 607261, a gene entry (detail)
  104. removing 176390, a gene entry (detail)
  105. removing 300033, a gene entry (detail)
  106. removing 600045, a gene entry (detail)
  107. removing 186960, a gene entry (detail)
  108. removing 179820, a gene entry (detail)
  109. removing 309860, a gene entry (detail)
  110. removing 186770, a gene entry (detail)
  111. removing 489500, a gene entry (detail)
  112. removing 107741, a gene entry (detail)
  113. removing 516050, a gene entry (detail)
  114. New small files (detail)
  115. Removing old small files (detail)
  116. correcting annotation format (detail)
  117. Merge branch 'master' into v2files (detail)
  118. Removing v2 files from separate directory (detail)
  119. Updating annotation (detail)
  120. Correcting evidence codes (detail)
  121. Correcting and updating frequency annotations (detail)
  122. Removing 302380, a moved to entry (detail)
  123. Correcting frequency data from literature (detail)
  124. new version of small/big files for check (detail)
  125. removing very rare annotation (detail)
  126. Next batch of v2 files (detail)
  127. correcting empty date field entries (detail)
  128. correcting malformed frequency in Cohen syndrome (detail)
  129. Adding omit list (detail)
  130. Updating annotation (detail)
  131. Updating annotations (detail)
  132. Removing 614562, a moved to entry (detail)
  133. removing 614132 a moved to entry (detail)
  134. Removing 614087, a moved-to entry (detail)
  135. Removing 613853, a moved to entry (detail)
  136. removing 613740 a moved to entry (detail)
  137. removing 613097, a moved to entry (detail)
  138. removing 608578, a moved-to entry (detail)
  139. removing 607552, a moved to entry (detail)
  140. removing 600737 a moved to entry (detail)
  141. removing 311150, a moved to entry (detail)
  142. removing 309605, a moved to (detail)
  143. removing 300421, a moved-to entry (detail)
  144. removing 300220, a moved-to (detail)
  145. Removing 275550, a moved-to entry (detail)
  146. removing 270710, a moved-to (detail)
  147. Removing moved-to (detail)
  148. Removing 193050, an MOVED_TO entry (detail)
  149. remving 155800, a MOVED-TO entry. Replacement is OK (detail)
  150. Removing 136610, it is a MOVED-TO and also a Gene entry. There is not replacment for this (detail)
  151. Updating annotation files (detail)
  152. updating annotations (detail)
  153. Updating annotation files (detail)
  154. Log file for old file conversion (detail)
  155. Adding V2 files (detail)
  156. fixed ingest (detail)
  157. phenotype_annotation (detail)
  158. adding directory with v2 files (detail)
  159. added new annotation for OMIM:253260 (detail)

Started by upstream project "hpo" build number 1,708
originally caused by: