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Changes

#1247 (Dec 12, 2017 1:49:33 PM)

  1. updating 206200 — pnrobinson / detail
  2. Updating annotation for 613587 — pnrobinson / detail
  3. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data.git — sebastian / detail
  4. fix invalid annotation file

    related to #168 — sebastian / detail
  5. Updating annotations — pnrobinson / detail
  6. updating annotations — pnrobinson / detail
  7. merging Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  8. Adding 613399 — pnrobinson / detail
  9. try add column for raw frequency information — sebastian / detail

#1246 (Oct 9, 2017 10:47:20 AM)

  1. remove date-filter option — sebastian / detail

#1243 (Oct 5, 2017 11:38:43 AM)

  1. further fixes of annotations to obsolete term

    related to
    https://github.com/obophenotype/human-phenotype-ontology/issues/2417 — sebastian / detail
  2. fixed obsolete annotation

    related to
    https://github.com/obophenotype/human-phenotype-ontology/issues/2417 — sebastian / detail

#1241 (Jun 30, 2017 8:59:16 PM)

  1. updating 2 annotation files — pnrobinson / detail
  2. new annotations — pnrobinson / detail
  3. new annotations — pnrobinson / detail
  4. new annotations — pnrobinson / detail
  5. new annotations — pnrobinson / detail
  6. new annotations — pnrobinson / detail
  7. new annotations — pnrobinson / detail
  8. new annotations — pnrobinson / detail
  9. New annotation files — pnrobinson / detail
  10. new annotation — pnrobinson / detail

#1240 (Jun 22, 2017 9:05:46 AM)

  1. new disease annotations — pnrobinson / detail
  2. New annotations — pnrobinson / detail
  3. Added annotations to Congenital disorder of glycosylation, type IIC aka LADII — leigh / detail
  4. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data

    * 'master' of https://github.com/monarch-initiative/hpo-annotation-data:
      New entry
      New entry
      Removing MOVED entry 616369
      New annotated entries
      Removing MOVED TO entry 613832 and updating the new entry 607459
      Adding new annotation files — leigh / detail
  5. Add annotations to LAD-1v and Nimmegen breakage syndrome — leigh / detail
  6. New entry — pnrobinson / detail
  7. New entry — pnrobinson / detail
  8. Removing MOVED entry 616369 — pnrobinson / detail
  9. New annotated entries — pnrobinson / detail
  10. Removing MOVED TO entry 613832 and updating the new entry 607459 — pnrobinson / detail
  11. Adding new annotation files — pnrobinson / detail
  12. new annotations — pnrobinson / detail
  13. Adding new disease annotation — pnrobinson / detail
  14. Added terms to OMIM:615273 — leigh / detail
  15. New disease annotation — pnrobinson / detail
  16. Updating annotations for 6154273 — pnrobinson / detail
  17. Removing non disease entry (eyebrow whorl, 1912) — pnrobinson / detail
  18. Adding 2 new diseases — pnrobinson / detail
  19. Adding new diseases--done with Feb2016 — pnrobinson / detail
  20. Adding 2 new diseases — pnrobinson / detail
  21. Adding new diseases — pnrobinson / detail
  22. Adding new disease annotation files — pnrobinson / detail
  23. Adding new disease annotations — pnrobinson / detail
  24. New disease annotation files — pnrobinson / detail
  25. Adding new annotation files — pnrobinson / detail
  26. Adding new annotation files — pnrobinson / detail
  27. Removing MOVED entry 609464 — pnrobinson / detail
  28. mergeMerge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  29. Updating annotations — pnrobinson / detail
  30. New disease entry 617321 — pnrobinson / detail
  31. Revising annotations — pnrobinson / detail
  32. mergeMerge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  33. Removing MOVED TO entry 130010 and updatinig corresponding correct entry 130000 — pnrobinson / detail
  34. Removing legacy OMIM entry for ability to move ears — pnrobinson / detail
  35. Removing legacy entry for diagonal ear crease — pnrobinson / detail
  36. Removing legacy OMIM entry for attached earlobe — pnrobinson / detail
  37. Removing legacy OMIM entry for Ear flare — pnrobinson / detail
  38. Removing gene entry 126150 — pnrobinson / detail
  39. mergeMerge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  40. Updating WHIM annotations — pnrobinson / detail
  41. Updating various annotations — pnrobinson / detail
  42. Removing gene entry 124020 — pnrobinson / detail
  43. Adding annotations for 616357 — pnrobinson / detail
  44. Removing gene entry 122560, corticotropin releasing hormone — pnrobinson / detail
  45. Updating 122000 — pnrobinson / detail
  46. Removing moved to entry 121700 — pnrobinson / detail
  47. Removing 116950, not a disease — pnrobinson / detail
  48. mergeMerge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  49. Updating annotations — pnrobinson / detail
  50. Updating annotations for Noonan 8 — pnrobinson / detail
  51. Removing gene entry for carcinoembryonic antigen-no association disease — pnrobinson / detail
  52. Removing gene entry for CYP1A1, not a disease — pnrobinson / detail
  53. Extending annotations for 614500 — pnrobinson / detail
  54. Adding new annotation file fopr BBS-21, OMIM-617406 — pnrobinson / detail
  55. Revising annotations — pnrobinson / detail
  56. Removing redundant gene entry 104150 AFP — pnrobinson / detail
  57. Correcting disease ID error — pnrobinson / detail
  58. Removing MOVED entry 615118 and updating corresponding new entry 269300 — pnrobinson / detail
  59. Removing MOVED entry 606937, and updating corresponding new entry 251300 — pnrobinson / detail
  60. Removing MOVED entry 606155 and updating the new entry 243310 — pnrobinson / detail
  61. Removing gene entry 600845 and updating corresponding disease entry 609821 — pnrobinson / detail
  62. Removing MOVED entry and updating corresponding new entry — pnrobinson / detail
  63. Removing gene entry for VRAF (no Mendelian disease entry) — pnrobinson / detail
  64. Removing gene entry 309850 and updating corresponing disease entry — pnrobinson / detail
  65. Removing a MOVED entry and updating the corresponding moved to entry — pnrobinson / detail
  66. Removing MOVED entry 300258 and updating corresponding disease moved to entry 616651 — pnrobinson / detail
  67. Removing MOVED entry 249210 and updating moved to entry — pnrobinson / detail
  68. Removing MOVED entry 227200 and updating moved to entry 614841 — pnrobinson / detail
  69. Removing MOVED entry 211170 and updating the moved to entry 249420 — pnrobinson / detail
  70. Removing MOVED entry 208200 and updating the entry it moved to, viz, 259450 — pnrobinson / detail
  71. Remiving redundant gene entry and updating disease entry — pnrobinson / detail
  72. Removing gene entry 186830 and updating corresponding disease entry 615615 — pnrobinson / detail
  73. Removing gene entry 186740 and updating corresponding disease entry 615607 — pnrobinson / detail
  74. Removing gene entry 170995, and updating corresponding gene entry 616278 — pnrobinson / detail
  75. Removing MOVED entry 154000 and updating the replaced by entry 145250 — pnrobinson / detail
  76. Removing gene entry 152780 and extending annotations to corresponding disease entry — pnrobinson / detail
  77. Removing 107741, redundant entry for Apolipoprotein E — pnrobinson / detail
  78. Removing redundant entry Acetaminophen metabolism — pnrobinson / detail
  79. Adding disease file for ALPHA-FETOPROTEIN, HEREDITARY PERSISTENCE OF — pnrobinson / detail
  80. Removing 108370 (a gene entry), and updating corresponding disease entry — pnrobinson / detail
  81. Removing gene entry 138040 and revising annotations — pnrobinson / detail
  82. Updated annotations — pnrobinson / detail
  83. Updating annotations — pnrobinson / detail
  84. Adding new disease data for OMIM 616737 — pnrobinson / detail
  85. merging
    Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data — pnrobinson / detail
  86. Updating annotations — pnrobinson / detail
  87. improve err message — drseb / detail
  88. Merge branch 'master' of https://github.com/monarch-initiative/hpo-annotation-data.git — drseb / detail
  89. Removing MOVEDTO file 108110 — pnrobinson / detail
  90. Removing gene annotation 107680 — pnrobinson / detail
  91. regenerate jar

    allow another date format — drseb / detail
  92. Corrected annotations — pnrobinson / detail
  93. Updating annotations and correcting formats — pnrobinson / detail
  94. Updating annotations — pnrobinson / detail
  95. updating annotations — pnrobinson / detail
  96. Updated annotations for PKD1 — pnrobinson / detail
  97. Updating OMIM 614688 — pnrobinson / detail
  98. removing redundent gene entry OMIM-102770 — pnrobinson / detail
  99. Updating annotations for 231530 — pnrobinson / detail
  100. Updated annotations for OMIM-114030.tab — pnrobinson / detail

#1239 (Apr 13, 2017 10:51:28 AM)

  1. fix date and ref — sebastian / detail
  2. fix Lisch nodules annotation to be negative

    closes
    https://github.com/obophenotype/human-phenotype-ontology/issues/1454 — drseb / detail
  3. Fixing invalid character in OMIM:605714 — pnrobinson / detail
  4. ignore further artefacts — sebastian / detail

#1237 (Mar 9, 2017 8:40:01 PM)

  1. load latest hp via purl — drseb / detail
  2. write ORPHA instead of ORPHANET

    ref is now orphadata — sebastian / detail

#1233 (Jan 13, 2016 1:18:26 PM)

  1. obtain the latest hp.obo from bbop-jenkins

    we are doing this because fetching from jenkins at charite is currently
    problematic. not sure this will be changed again in the near future — drseb / detail

#1232 (Jan 13, 2016 12:00:51 PM)

  1. fixing date error — sebastian / detail
  2. fixing date format — sebastian / detail
  3. fixing makefile

    should now run jenkins and travis... maybe — sebastian / detail
  4. makefile did not run on travis (aria2c + proxy issues).

    should run on jenkins and travis — sebastian / detail
  5. Adding an annotation to 158901 — pnrobinson / detail
  6. Updated annotations of two diseases — pnrobinson / detail
  7. Adding new annotation for 117650 — pnrobinson / detail
  8. Updating annotations of MIM:205100 — pnrobinson / detail

#1231 (Dec 1, 2015 6:36:55 PM)

  1. new omim entry — sebastian / detail
  2. new omim entry — sebastian / detail
  3. new entry — sebastian / detail
  4. add annotation to Hyperkeratotic papule

    closes
    https://github.com/obophenotype/human-phenotype-ontology/issues/549 — drseb / detail